Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq85 127 3e-24 >seq85 Length=66049 Score = 127 bits (140), Expect = 3e-24 Identities = 306/454 (67%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 ||||| | || ||||||||||||||||| ||||| || |||||| ||| |||||||| Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAGATGTTCTCCAT 3440 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845 ||| ||||| ||||| | | || | | || | | || | | ||||||| Sbjct 3439 AAAGTCAAAGGGGTTGCTGGCCTTGTAGACCT-TGTCGTTGCCGAGGGCCATCAGGAGAC 3381 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| | |||||||| ||| |||| |||||| || | ||| || Sbjct 3380 GGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCAC 3321 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || | |||| |||||||||| | ||||| || | |||| | | Sbjct 3320 AGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTCCT 3261 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACG---GCAAAC 130021 ||| | | ||| || | ||| || || | |||| || | ||||| Sbjct 3260 CAATCAGTTGCTTGCTGGGGCGGTTGTT-AAGGTGGGAGTAGAG---CAGGCAAGCAAAG 3205 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || ||||| ||||||||||| || || || |||||| |||||| |||||| Sbjct 3204 TCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATG 3145 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| ||||| || |||||| || | ||| | || ||||||||||| ||||| Sbjct 3144 AGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCG 3085 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||| || || |||| |||||||| ||||||| Sbjct 3084 ACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG 3051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425482836920