Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq85 127 3e-24
>seq85
Length=66049
Score = 127 bits (140), Expect = 3e-24
Identities = 306/454 (67%), Gaps = 12/454 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786
||||| | || ||||||||||||||||| ||||| || |||||| ||| ||||||||
Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAGATGTTCTCCAT 3440
Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845
||| ||||| ||||| | | || | | || | | || | | |||||||
Sbjct 3439 AAAGTCAAAGGGGTTGCTGGCCTTGTAGACCT-TGTCGTTGCCGAGGGCCATCAGGAGAC 3381
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| || | ||| | |||||||| ||| |||| |||||| || | ||| ||
Sbjct 3380 GGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCAC 3321
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
| || || || || | |||| |||||||||| | ||||| || | |||| | |
Sbjct 3320 AGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTCCT 3261
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACG---GCAAAC 130021
||| | | ||| || | ||| || || | |||| || | |||||
Sbjct 3260 CAATCAGTTGCTTGCTGGGGCGGTTGTT-AAGGTGGGAGTAGAG---CAGGCAAGCAAAG 3205
Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081
|| ||| || ||||| ||||||||||| || || || |||||| |||||| ||||||
Sbjct 3204 TCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATG 3145
Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141
||||| ||||| || |||||| || | ||| | || ||||||||||| |||||
Sbjct 3144 AGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCG 3085
Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
||| || || |||| |||||||| |||||||
Sbjct 3084 ACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG 3051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618425482836920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |