Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq54 176 5e-39 seq85 116 4e-21 seq368 104 3e-17 seq142 84.2 3e-11 >seq54 Length=76171 Score = 176 bits (194), Expect = 5e-39 Identities = 884/1389 (64%), Gaps = 37/1389 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || || | || || || || || |||| |||| |||||| Sbjct 17905 ACATGATCATGCGTGTTGCTGTTGGAATCTGGGGTGATGATGTTGAACGTGTCCTGGAGA 17964 Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346 | ||| || ||||| |||| | | ||| ||| ||| | ||||| || ||||| || Sbjct 17965 CCTACAACCTCATGTCGAGCAAGTTCT--TCACTCATGCATCCCCAACTCTTTTCAACGC 18022 Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 ||||| || | ||| |||| |||||||| | | | ||||| ||| || Sbjct 18023 CGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATATGAAGGATGACAGCAT 18082 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGT 104464 | |||||||||| ||||| | | | ||||| | ||||| ||| ||| || ||| Sbjct 18083 TGAGGGTATCTATGACACTCTGAAA-ACT-TGCGCTATGATCTCCAAGATGGCGGGTGGT 18140 Query 104465 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 104524 ||||| || || | || | | |||| | ||| ||| || || || ||| Sbjct 18141 ATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACATTGCCGGCACTAACGGT 18200 Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584 || | ||||| |||| ||||| || || || ||| ||| || || || || | Sbjct 18201 ACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTTGAC 18260 Query 104585 CAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638 || | ||| ||||| || || | || |||| || ||||| ||||||||| Sbjct 18261 CAGGGTGGCAACAAGCGTCCT---GGTGCTTTTGCTATCTACCTCGAGCCGTGGCACGCG 18317 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGC 104698 ||| | | |||||||| || | || || || || | || || | || ||| Sbjct 18318 GATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGAAGTCCGTGCCCGT 18377 Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| ||| ||||| ||||| || ||||| ||||||||| | ||||| ||| | | Sbjct 18378 GATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGCC 18437 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT--GGGTGAGG 104816 | ||| |||| | || || | || |||||||| | || | || || || | Sbjct 18438 GAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGA--CTGTTACGGCGATG 18495 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTGCC 104874 |||| || || | ||| ||||| || | || |||| || ||||| ||| | Sbjct 18496 AGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTCGACT--GACTCTCAA 18553 Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934 ||| | ||||| | ||||| || | |||| || |||||||||| || | ||| Sbjct 18554 AGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTGGTAACCCGTTCAT 18613 Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994 ||| ||||| ||| ||| |||| |||||||| || ||||| ||||| ||| || Sbjct 18614 GCTGTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACTATCCGCAG 18673 Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054 ||||| || || || || || | |||| | |||||| ||||| || || Sbjct 18674 CTCCAACCTGTGCACTGAGATTATTGAATACTGTGCTCCTGATGAGGTTGCTGTCTGCAA 18733 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATG 105113 ||| || || | || ||||| | | | || | || || || | | |||| Sbjct 18734 CCTTGCTTCTTTGGCCCTCCCTGCCTTTATTGACTACACCAAC-AACTCGTACGATTTCC 18792 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 | || || ||||| || || || ||| ||||| ||| | | || ||| | Sbjct 18793 ATAAGCTGCACGAGGTCACCAAGGTTGTTGTTCGCAACCTGAACCGCATCATCGATGTCA 18852 Query 105174 ATTTTTACCCCGTTGAGACT---GCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 | ||||| ||| ||| || ||| || ||| | |||||||| || ||| Sbjct 18853 ACCACTACCCTGTT---ACTGAAGCATATAACAGCAACATGCGTCACCGTCCCATCGGTG 18909 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGAC 105289 |||||||||||||||| || || | ||| | || || ||| | ||||| || | Sbjct 18910 TCGGTGTTCAGGGTCTTGCCGACGCCTTCCTGGCTCTG-CGCATGCCCTTTGAGTCGGCT 18968 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 || || | |||| | | || || |||||||| || ||||| ||||||||||| Sbjct 18969 GAGGCCCGCCAGCTCAACACTCATATCTTCGAGACCATTTACCACGCTGCTCTTGAGGCC 19028 Query 105350 AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 | ||| | || || || || || |||| ||||| || || | || Sbjct 19029 TCGTGCGAGATTGCTCAGAAGGAGGGCAAGTACTCGACCTACGAGGGCTCGCCTGTGTCC 19088 Query 105410 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTCACTACGACTGGGA 105468 || || | || || ||||| |||| |||| || | || || | || |||||| Sbjct 19089 CAGGGCATCCTGCAGTTTGACATGT-GGAATGTCACTCCCAGTGACCTCTGGGACTGGAC 19147 Query 105469 AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAAT 105528 | || ||||||| |||||| || | ||| | || ||| | | || | || || || Sbjct 19148 CTCACTGAAGGAACAGATCAAGCAGCACGGTATCCGCAACTCTTTACTACTTGCGCCCAT 19207 Query 105529 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 105588 ||| || ||| || | || || |||| ||||| |||||||| || |||||||| | Sbjct 19208 GCCCACCGCCAGTACTTCCCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTACACCTC 19267 Query 105589 GAACATCTA 105597 ||||| || Sbjct 19268 CAACATTTA 19276 >seq85 Length=66049 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 94753 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 94809 || || || ||||| |||||||| | | |||| |||| | ||||||| |||| Sbjct 3008 AAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTC---TACCTTTGCCCAGCGT 3064 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 ||| | || ||||| ||| ||||||||||||||||| ||| | || | | || | Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||| ||| Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 3184 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || ||| || ||||| Sbjct 3185 GATGAGGGCCTTCACACTGACTTTGC 3210 >seq368 Length=24549 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||||||||||||||| |||| || || || ||||| || || |||| | Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || || |||||| | || ||||||||||||||||||||||| | | | || ||| Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || || || || || || ||||| |||| ||| || || ||||| ||||| Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||| ||| |||| ||||| |||||| || || |||||||| ||| Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCA 8461 >seq142 Length=50854 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 ||||| |||||| ||||| | |||||| | ||||| || || ||| |||| Sbjct 43351 GCATCGGAACCACCAGCAAGACGAGAACCAAAGTTACCACTGGGTTCGAGACAGTTGACG 43410 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| ||||| | |||| | ||| | | ||| || | ||||| |||||| Sbjct 43411 TTGTTGGAACCAACAAAGTCCTGCGCAAGACCAATAATAGTCTGTTGCAGAGATACTTCA 43470 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634 ||||| ||||||| | ||| | | ||| | | ||||||| | || ||||| | Sbjct 43471 CCGTGCTGGTACGAAGTCTGACCCGAAACATAACCAGCCAACTCGACAACCTTCAT---A 43527 Query 168635 TCCTTGAGATTCTTG---TGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 168691 ||||||| ||| | |||||| |||||||| ||||||||||| |||||||| Sbjct 43528 TCCTTGACCACGTTGCTCTTGAAGCAGGCGTACATGACCTTGCGTTGGCCGGGCTTGAGG 43587 Query 168692 CCATCC 168697 |||||| Sbjct 43588 CCATCC 43593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251635514680