Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq54 176 5e-39
seq85 116 4e-21
seq368 104 3e-17
seq142 84.2 3e-11
>seq54
Length=76171
Score = 176 bits (194), Expect = 5e-39
Identities = 884/1389 (64%), Gaps = 37/1389 (3%)
Strand=Plus/Plus
Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288
||||| ||||||| || || | || || || || || |||| |||| ||||||
Sbjct 17905 ACATGATCATGCGTGTTGCTGTTGGAATCTGGGGTGATGATGTTGAACGTGTCCTGGAGA 17964
Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346
| ||| || ||||| |||| | | ||| ||| ||| | ||||| || ||||| ||
Sbjct 17965 CCTACAACCTCATGTCGAGCAAGTTCT--TCACTCATGCATCCCCAACTCTTTTCAACGC 18022
Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406
||||| || | ||| |||| |||||||| | | | ||||| ||| ||
Sbjct 18023 CGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATATGAAGGATGACAGCAT 18082
Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGT 104464
| |||||||||| ||||| | | | ||||| | ||||| ||| ||| || |||
Sbjct 18083 TGAGGGTATCTATGACACTCTGAAA-ACT-TGCGCTATGATCTCCAAGATGGCGGGTGGT 18140
Query 104465 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 104524
||||| || || | || | | |||| | ||| ||| || || || |||
Sbjct 18141 ATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACATTGCCGGCACTAACGGT 18200
Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584
|| | ||||| |||| ||||| || || || ||| ||| || || || || |
Sbjct 18201 ACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTTGAC 18260
Query 104585 CAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638
|| | ||| ||||| || || | || |||| || ||||| |||||||||
Sbjct 18261 CAGGGTGGCAACAAGCGTCCT---GGTGCTTTTGCTATCTACCTCGAGCCGTGGCACGCG 18317
Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGC 104698
||| | | |||||||| || | || || || || | || || | || |||
Sbjct 18318 GATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGAAGTCCGTGCCCGT 18377
Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758
||||| ||| ||||| ||||| || ||||| ||||||||| | ||||| ||| | |
Sbjct 18378 GATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGCC 18437
Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT--GGGTGAGG 104816
| ||| |||| | || || | || |||||||| | || | || || || |
Sbjct 18438 GAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGA--CTGTTACGGCGATG 18495
Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTGCC 104874
|||| || || | ||| ||||| || | || |||| || ||||| ||| |
Sbjct 18496 AGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTCGACT--GACTCTCAA 18553
Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934
||| | ||||| | ||||| || | |||| || |||||||||| || | |||
Sbjct 18554 AGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTGGTAACCCGTTCAT 18613
Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994
||| ||||| ||| ||| |||| |||||||| || ||||| ||||| ||| ||
Sbjct 18614 GCTGTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACTATCCGCAG 18673
Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054
||||| || || || || || | |||| | |||||| ||||| || ||
Sbjct 18674 CTCCAACCTGTGCACTGAGATTATTGAATACTGTGCTCCTGATGAGGTTGCTGTCTGCAA 18733
Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATG 105113
||| || || | || ||||| | | | || | || || || | | ||||
Sbjct 18734 CCTTGCTTCTTTGGCCCTCCCTGCCTTTATTGACTACACCAAC-AACTCGTACGATTTCC 18792
Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173
| || || ||||| || || || ||| ||||| ||| | | || ||| |
Sbjct 18793 ATAAGCTGCACGAGGTCACCAAGGTTGTTGTTCGCAACCTGAACCGCATCATCGATGTCA 18852
Query 105174 ATTTTTACCCCGTTGAGACT---GCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230
| ||||| ||| ||| || ||| || ||| | |||||||| || |||
Sbjct 18853 ACCACTACCCTGTT---ACTGAAGCATATAACAGCAACATGCGTCACCGTCCCATCGGTG 18909
Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGAC 105289
|||||||||||||||| || || | ||| | || || ||| | ||||| || |
Sbjct 18910 TCGGTGTTCAGGGTCTTGCCGACGCCTTCCTGGCTCTG-CGCATGCCCTTTGAGTCGGCT 18968
Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349
|| || | |||| | | || || |||||||| || ||||| |||||||||||
Sbjct 18969 GAGGCCCGCCAGCTCAACACTCATATCTTCGAGACCATTTACCACGCTGCTCTTGAGGCC 19028
Query 105350 AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409
| ||| | || || || || || |||| ||||| || || | ||
Sbjct 19029 TCGTGCGAGATTGCTCAGAAGGAGGGCAAGTACTCGACCTACGAGGGCTCGCCTGTGTCC 19088
Query 105410 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTCACTACGACTGGGA 105468
|| || | || || ||||| |||| |||| || | || || | || ||||||
Sbjct 19089 CAGGGCATCCTGCAGTTTGACATGT-GGAATGTCACTCCCAGTGACCTCTGGGACTGGAC 19147
Query 105469 AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAAT 105528
| || ||||||| |||||| || | ||| | || ||| | | || | || || ||
Sbjct 19148 CTCACTGAAGGAACAGATCAAGCAGCACGGTATCCGCAACTCTTTACTACTTGCGCCCAT 19207
Query 105529 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 105588
||| || ||| || | || || |||| ||||| |||||||| || |||||||| |
Sbjct 19208 GCCCACCGCCAGTACTTCCCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTACACCTC 19267
Query 105589 GAACATCTA 105597
||||| ||
Sbjct 19268 CAACATTTA 19276
>seq85
Length=66049
Score = 116 bits (128), Expect = 4e-21
Identities = 151/206 (73%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 94753 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 94809
|| || || ||||| |||||||| | | |||| |||| | ||||||| ||||
Sbjct 3008 AAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTC---TACCTTTGCCCAGCGT 3064
Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869
||| | || ||||| ||| ||||||||||||||||| ||| | || | | || |
Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124
Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929
||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||| |||
Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 3184
Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955
|| ||||| || ||| || |||||
Sbjct 3185 GATGAGGGCCTTCACACTGACTTTGC 3210
>seq368
Length=24549
Score = 104 bits (114), Expect = 3e-17
Identities = 160/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
||||||||||||||||| |||| || || || ||||| || || |||| |
Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626
Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822
|| || |||||| | || ||||||||||||||||||||||| | | | || |||
Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566
Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882
| || || || || || || ||||| |||| ||| || || ||||| |||||
Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507
Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928
||| ||| |||| ||||| |||||| || || |||||||| |||
Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCA 8461
>seq142
Length=50854
Score = 84.2 bits (92), Expect = 3e-11
Identities = 167/246 (68%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
||||| |||||| ||||| | |||||| | ||||| || || ||| ||||
Sbjct 43351 GCATCGGAACCACCAGCAAGACGAGAACCAAAGTTACCACTGGGTTCGAGACAGTTGACG 43410
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574
||||| ||||| | |||| | ||| | | ||| || | ||||| ||||||
Sbjct 43411 TTGTTGGAACCAACAAAGTCCTGCGCAAGACCAATAATAGTCTGTTGCAGAGATACTTCA 43470
Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634
||||| ||||||| | ||| | | ||| | | ||||||| | || ||||| |
Sbjct 43471 CCGTGCTGGTACGAAGTCTGACCCGAAACATAACCAGCCAACTCGACAACCTTCAT---A 43527
Query 168635 TCCTTGAGATTCTTG---TGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 168691
||||||| ||| | |||||| |||||||| ||||||||||| ||||||||
Sbjct 43528 TCCTTGACCACGTTGCTCTTGAAGCAGGCGTACATGACCTTGCGTTGGCCGGGCTTGAGG 43587
Query 168692 CCATCC 168697
||||||
Sbjct 43588 CCATCC 43593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583251635514680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |