Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq30 145 2e-29
seq418 140 1e-27
seq38 116 1e-20
seq59 111 5e-19
seq188 109 2e-18
seq169 98.7 3e-15
>seq30
Length=92847
Score = 145 bits (160), Expect = 2e-29
Identities = 173/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| |||||||| | | ||||| ||||| ||||||||||| || || || || |
Sbjct 12710 TTTACTGGCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGT 12651
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | || || || |||||||| || ||||||||||| || ||||| |||||||
Sbjct 12650 AGTCTGCCAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGAT 12591
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || ||||| ||||| | || || |
Sbjct 12590 CCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGG 12531
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || |||| ||||| || || || || || ||||| || |||||
Sbjct 12530 TCTCAACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 127 bits (140), Expect = 6e-24
Identities = 162/223 (73%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| ||||| ||||||||||| || ||||| || |
Sbjct 12482 TTTGCATACCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGT 12423
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | || || || || || || || || || || || || || || ||||| |
Sbjct 12422 AGTCTGCCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGT 12363
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || ||||| || |||||||| || | || ||||| ||||| | || || |
Sbjct 12362 CAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGG 12303
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| ||||| || || | ||||||||||| || || || ||
Sbjct 12302 ACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 12260
Score = 116 bits (128), Expect = 1e-20
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || || ||||| || ||||| || ||||| || || ||
Sbjct 12161 CATACCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 12102
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || || |||||||| || ||||||||||| || ||||| |||||||| ||
Sbjct 12101 CGCAAGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGG 12042
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||| ||||| || | ||| || || || || | || || | |||
Sbjct 12041 GGGGATACCCTCCTTATCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTC 11982
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| || || || | ||||| || ||
Sbjct 11981 AACCTCGAGGGTGATGGTCTTGCCAGT 11955
>seq418
Length=21626
Score = 140 bits (154), Expect = 1e-27
Identities = 414/626 (66%), Gaps = 17/626 (3%)
Strand=Plus/Plus
Query 349282 AGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGA 349341
||||||| | | || || || ||||| || || || || |||||| | | |||||
Sbjct 12154 AGGTAACCGCATCACTCCCTCGTACGTCGCCTTCACTGAGGAGGAGCGTCTCGTCGGTGA 12213
Query 349342 TTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACT 349401
| || || || || || | || ||||| | || || | || |||| ||||| ||
Sbjct 12214 CGCCGCCAAGAACCAGGCCCCCGCGAATCCCATCAACACCATCTTCGATGTCAAGCGTCT 12273
Query 349402 TATTGGTAG-AAGTTTTTCTGACAA--ATCTACACAATCTGATCTAAAACATTTTCCTTT 349458
|||||| | ||||| | || || | || || | ||| | || || || || |
Sbjct 12274 GATTGGTCGCAAGTTCGAC-GAGAAGGAGCTCCAGG--CCGATATCAAGCACTTCCCCTA 12330
Query 349459 TACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAA-C 349517
| ||||| ||| | | | || ||| ||| |||| |||||||||| || ||| |
Sbjct 12331 CAAGGTTGT--CAACA-AGGCTGGTAAGCCATTTATCAAGGTTGAATACAAGGGTTCCTC 12387
Query 349518 AAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTG 349577
|| || |||| ||||| || ||||| | ||| | | | || |||||||| |||
Sbjct 12388 CAAGACC-TTTTCCCCCGAGGAGATTTCGGCCATGATCCTCGGCAAGATGAAGGAGGTTG 12446
Query 349578 CTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTA 349637
| || || || | || | || || | || ||| |||| || || ||||| || |
Sbjct 12447 CCGAGGCTTACCTCGGCAAGACCGTCAGCTCCGCCGTTGTTACCGTTCCCGCCTACTTCA 12506
Query 349638 ATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAA 349697
| || ||||||||| || || || |||||||| | |||||| || | || ||||
Sbjct 12507 ACGACGCCCAGCGTCAGGCTACCAAGGATGCTGGTACCATTGCCGGTCTGAACATTCTCC 12566
Query 349698 GAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGA--GTG 349754
| || |||| || ||||||||||| || || || || || || || || | ||| |||
Sbjct 12567 GTATTGTTAACGAGCCCACTGCTGCCGCTATCGCCTACGGTCTGGACAAGACTGATGGTG 12626
Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814
| || | || || | | || | |||||||||||||||||||| || ||
Sbjct 12627 GC---GAGCGCCAGATCATTGTCTACGACCTTGGTGGTGGTACTTTTGATGTTTCTCTTT 12683
Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874
| | ||||| || | ||||| ||| || || ||||||||||| || || ||||
Sbjct 12684 TGTCTATTGAATCTGGTGTCTTTGAGGTTTTGGCCACCGCTGGTGATACCCACCTGGGTG 12743
Query 349875 GAGAAGATTTTGATAATCGTCTCGTT 349900
| || |||||||| | ||| || ||
Sbjct 12744 GTGAGGATTTTGACCAGCGTGTCATT 12769
>seq38
Length=86511
Score = 116 bits (128), Expect = 1e-20
Identities = 189/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || ||||| || ||||| || || || |||||||| || || || || |
Sbjct 70322 GCCGTCATCACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACTAAGGACTCC 70263
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| ||||| || | || || || | || || || || ||||||||||| || ||
Sbjct 70262 GGTCTTATTGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATC 70203
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | ||| || || | || || || ||| | |||
Sbjct 70202 GCCTACGGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 70143
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||||||||| || || || || |||| || || || ||||| || || |
Sbjct 70142 GGTGGTACTTTTGATGTTTCGCTCCTGACGATTGAGGATGGTATCTTTGAGGTCAAGTCG 70083
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
||||||||||| || || || ||||| |||||
Sbjct 70082 ACTGCTGGTGACACTCACCTGGGTGGTGAAGA 70051
>seq59
Length=73848
Score = 111 bits (122), Expect = 5e-19
Identities = 147/203 (72%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 140537 AAGAGTAGACT--CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594
||| ||| ||| | || || ||||| || || | | || || ||||| || || ||
Sbjct 15431 AAGGGTAAACTGACCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGC 15490
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| ||||||||||| || || ||||| || |||||||| || || || ||||| || ||
Sbjct 15491 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 15550
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || ||||| || || | || || | ||||| || || |||| ||||| || |||
Sbjct 15551 GACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTT 15610
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
|| || || || |||||||||||
Sbjct 15611 AGGGTCTTGACGAAAATCTGCAT 15633
>seq188
Length=42393
Score = 109 bits (120), Expect = 2e-18
Identities = 115/151 (76%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || |||||||| | ||||||||| |||| ||||||||||||
Sbjct 33942 ATTTCTTTGAGACGGGGCACACCGAGAGTAACATTCTTACTAGAC---ACACCAGCAAAG 33886
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
|||||||| || || || | || |||| ||||||||||| ||||| || || | ||||
Sbjct 33885 TGGAAAGTGTTGAGCGTCATCTGGGTAGCAGGCTCACCAATGGACTGAGCGGCCAGAACG 33826
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGCCT 377596
||||||||||| ||||| || | || ||||
Sbjct 33825 CCAACCATTTCACCAGGGTTAATAAACGCCT 33795
>seq169
Length=45351
Score = 98.7 bits (108), Expect = 3e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 32213 ATACCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 32272
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
| | || || ||||| ||||| || || ||||||||||| || || ||||| || ||
Sbjct 32273 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGG 32332
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
|| || || || || ||||| || || | || || || || |||| || || | ||
Sbjct 32333 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCG 32392
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || |||| ||||| || || || || || || |||
Sbjct 32393 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515229996354371
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |