Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq30 145 2e-29 seq418 140 1e-27 seq38 116 1e-20 seq59 111 5e-19 seq188 109 2e-18 seq169 98.7 3e-15 >seq30 Length=92847 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | ||||| ||||| ||||||||||| || || || || | Sbjct 12710 TTTACTGGCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGT 12651 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || |||||||| || ||||||||||| || ||||| ||||||| Sbjct 12650 AGTCTGCCAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGAT 12591 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || ||||| ||||| | || || | Sbjct 12590 CCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGG 12531 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || |||| ||||| || || || || || ||||| || ||||| Sbjct 12530 TCTCAACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 127 bits (140), Expect = 6e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| ||||| ||||||||||| || ||||| || | Sbjct 12482 TTTGCATACCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGT 12423 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || || || || || || || || || || ||||| | Sbjct 12422 AGTCTGCCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGT 12363 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || ||||| || |||||||| || | || ||||| ||||| | || || | Sbjct 12362 CAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGG 12303 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || || | ||||||||||| || || || || Sbjct 12302 ACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 12260 Score = 116 bits (128), Expect = 1e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || ||||| || ||||| || ||||| || || || Sbjct 12161 CATACCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 12102 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || |||||||| || ||||||||||| || ||||| |||||||| || Sbjct 12101 CGCAAGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGG 12042 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| ||||| || | ||| || || || || | || || | ||| Sbjct 12041 GGGGATACCCTCCTTATCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTC 11982 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| || || Sbjct 11981 AACCTCGAGGGTGATGGTCTTGCCAGT 11955 >seq418 Length=21626 Score = 140 bits (154), Expect = 1e-27 Identities = 414/626 (66%), Gaps = 17/626 (3%) Strand=Plus/Plus Query 349282 AGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGA 349341 ||||||| | | || || || ||||| || || || || |||||| | | ||||| Sbjct 12154 AGGTAACCGCATCACTCCCTCGTACGTCGCCTTCACTGAGGAGGAGCGTCTCGTCGGTGA 12213 Query 349342 TTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACT 349401 | || || || || || | || ||||| | || || | || |||| ||||| || Sbjct 12214 CGCCGCCAAGAACCAGGCCCCCGCGAATCCCATCAACACCATCTTCGATGTCAAGCGTCT 12273 Query 349402 TATTGGTAG-AAGTTTTTCTGACAA--ATCTACACAATCTGATCTAAAACATTTTCCTTT 349458 |||||| | ||||| | || || | || || | ||| | || || || || | Sbjct 12274 GATTGGTCGCAAGTTCGAC-GAGAAGGAGCTCCAGG--CCGATATCAAGCACTTCCCCTA 12330 Query 349459 TACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAA-C 349517 | ||||| ||| | | | || ||| ||| |||| |||||||||| || ||| | Sbjct 12331 CAAGGTTGT--CAACA-AGGCTGGTAAGCCATTTATCAAGGTTGAATACAAGGGTTCCTC 12387 Query 349518 AAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTG 349577 || || |||| ||||| || ||||| | ||| | | | || |||||||| ||| Sbjct 12388 CAAGACC-TTTTCCCCCGAGGAGATTTCGGCCATGATCCTCGGCAAGATGAAGGAGGTTG 12446 Query 349578 CTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTA 349637 | || || || | || | || || | || ||| |||| || || ||||| || | Sbjct 12447 CCGAGGCTTACCTCGGCAAGACCGTCAGCTCCGCCGTTGTTACCGTTCCCGCCTACTTCA 12506 Query 349638 ATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAA 349697 | || ||||||||| || || || |||||||| | |||||| || | || |||| Sbjct 12507 ACGACGCCCAGCGTCAGGCTACCAAGGATGCTGGTACCATTGCCGGTCTGAACATTCTCC 12566 Query 349698 GAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGA--GTG 349754 | || |||| || ||||||||||| || || || || || || || || | ||| ||| Sbjct 12567 GTATTGTTAACGAGCCCACTGCTGCCGCTATCGCCTACGGTCTGGACAAGACTGATGGTG 12626 Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | || | || || | | || | |||||||||||||||||||| || || Sbjct 12627 GC---GAGCGCCAGATCATTGTCTACGACCTTGGTGGTGGTACTTTTGATGTTTCTCTTT 12683 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 | | ||||| || | ||||| ||| || || ||||||||||| || || |||| Sbjct 12684 TGTCTATTGAATCTGGTGTCTTTGAGGTTTTGGCCACCGCTGGTGATACCCACCTGGGTG 12743 Query 349875 GAGAAGATTTTGATAATCGTCTCGTT 349900 | || |||||||| | ||| || || Sbjct 12744 GTGAGGATTTTGACCAGCGTGTCATT 12769 >seq38 Length=86511 Score = 116 bits (128), Expect = 1e-20 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || ||||| || || || |||||||| || || || || | Sbjct 70322 GCCGTCATCACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACTAAGGACTCC 70263 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||||| || | || || || | || || || || ||||||||||| || || Sbjct 70262 GGTCTTATTGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATC 70203 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | ||| || || | || || || ||| | ||| Sbjct 70202 GCCTACGGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 70143 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||||||||| || || || || |||| || || || ||||| || || | Sbjct 70142 GGTGGTACTTTTGATGTTTCGCTCCTGACGATTGAGGATGGTATCTTTGAGGTCAAGTCG 70083 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 ||||||||||| || || || ||||| ||||| Sbjct 70082 ACTGCTGGTGACACTCACCTGGGTGGTGAAGA 70051 >seq59 Length=73848 Score = 111 bits (122), Expect = 5e-19 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 140537 AAGAGTAGACT--CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 ||| ||| ||| | || || ||||| || || | | || || ||||| || || || Sbjct 15431 AAGGGTAAACTGACCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGC 15490 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||||||||| || || ||||| || |||||||| || || || ||||| || || Sbjct 15491 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 15550 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| || || | || || | ||||| || || |||| ||||| || ||| Sbjct 15551 GACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTT 15610 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||||||||| Sbjct 15611 AGGGTCTTGACGAAAATCTGCAT 15633 >seq188 Length=42393 Score = 109 bits (120), Expect = 2e-18 Identities = 115/151 (76%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || |||||||| | ||||||||| |||| |||||||||||| Sbjct 33942 ATTTCTTTGAGACGGGGCACACCGAGAGTAACATTCTTACTAGAC---ACACCAGCAAAG 33886 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 |||||||| || || || | || |||| ||||||||||| ||||| || || | |||| Sbjct 33885 TGGAAAGTGTTGAGCGTCATCTGGGTAGCAGGCTCACCAATGGACTGAGCGGCCAGAACG 33826 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGCCT 377596 ||||||||||| ||||| || | || |||| Sbjct 33825 CCAACCATTTCACCAGGGTTAATAAACGCCT 33795 >seq169 Length=45351 Score = 98.7 bits (108), Expect = 3e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 32213 ATACCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 32272 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | | || || ||||| ||||| || || ||||||||||| || || ||||| || || Sbjct 32273 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGG 32332 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || || || || |||| || || | || Sbjct 32333 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCG 32392 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || |||| ||||| || || || || || || ||| Sbjct 32393 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229996354371