Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq54 342 6e-89 seq85 158 1e-33 >seq54 Length=76171 Score = 342 bits (378), Expect = 6e-89 Identities = 927/1406 (66%), Gaps = 36/1406 (3%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||||||||| || ||| |||||| |||| ||||||| ||||| |||||||| || Sbjct 19304 GAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTC 19245 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||| || |||| ||||||| || |||||| |||||||| || | |||| ||| || Sbjct 19244 GTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTT 19185 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | ||| ||| |||||||| |||| || | |||||| | ||| | | Sbjct 19184 GCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGG 19125 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | || ||||||||| || ||||| |||| |||| | ||||| |||| | | || Sbjct 19124 AGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGT 19065 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800 | ||| ||||||| || || | ||||| || | || || |||||||| | Sbjct 19064 CGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAAT 19005 Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAG 78860 | ||||||||| ||||||||| ||| |||| | | || || | | || || Sbjct 19004 GGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAG 18945 Query 78861 CATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT 78920 || |||| | ||||| || ||||| || |||| | |||| || ||||| |||||||| Sbjct 18944 AGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTT 18885 Query 78921 GCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTT 78977 ||| || || || || ||||| ||| |||||||| |||||||||||| Sbjct 18884 GCTGTTATATGCT---TCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTT 18828 Query 78978 ACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGAT 79037 || || ||| || ||||||| || || |||||| | || || ||| | Sbjct 18827 GCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATCGTAC-GAGTTG--TTGGT 18771 Query 79038 G--------AAAGTC-GGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGG 79088 | |||| | || ||| || || || |||||||| || || ||| || || Sbjct 18770 GTAGTCAATAAAGGCAGGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGG 18711 Query 79089 GCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTT 79148 | | || || || || ||||||| || || ||| || || | |||||| Sbjct 18710 AGCACAGTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTT 18651 Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208 |||||| ||||| ||| ||| ||||||||| |||| |||| | || |||||| Sbjct 18650 CTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGT 18591 Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTAC-CGAC 79267 |||| | || | | | ||| | | |||| || | | | | | |||| Sbjct 18590 CTGAGCTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAGAGTCAG-TCGACCACGAC 18532 Query 79268 CCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACA-TCGGGCAGG 79326 ||| | ||| || |||||| | | ||| | || || || ||| || | ||| Sbjct 18531 CCTCCTTTTCATACTTCTCGTACAATGCCTCGAACTCATCGCCGTA-ACAGTCAGCCAGA 18473 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATG 79386 || |||||||| | |||||||| || ||| || ||| ||| ||||| || |||| Sbjct 18472 CCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATG 18413 Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || ||||||||||| ||| ||| || || ||| ||| | || || | ||| Sbjct 18412 AAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCG 18353 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 || ||| || || ||||| || || | | || |||||||||||||| || ||||| Sbjct 18352 TGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATA 18293 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | ||| |||||| ||| ||||||| ||||| || || ||||||||||| Sbjct 18292 GCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAAC 18233 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 || || ||||| || ||||| |||| | | ||||| || ||| || | ||| Sbjct 18232 ACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCA 18173 Query 79627 CTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGC 79685 | || |||||| | ||| || | || || || || | | ||||||||| || Sbjct 18172 GTGGCACGAATG-CGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGC 18114 Query 79686 GCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAA 79745 ||| || || || || ||||| ||||| || ||| ||||||||| | || ||||| Sbjct 18113 GCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAA 18054 Query 79746 GCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGT 79805 ||| |||| || | | | |||||||||||||| || || || | || || || Sbjct 18053 GCACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGT 17994 Query 79806 GAAGAACTTTTGGCT---CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCC 79862 ||||||||| ||| ||| || | ||| |||||| ||| || | || || || Sbjct 17993 GAAGAACTT---GCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACC 17937 Query 79863 GTGGATGCCGACCGCGACGCGCATGA 79888 ||| || || || || ||||||| Sbjct 17936 CCAGATTCCAACAGCAACACGCATGA 17911 Score = 324 bits (358), Expect = 2e-83 Identities = 930/1415 (66%), Gaps = 28/1415 (2%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||| || | ||||||| || || || || ||| || || || | || ||| Sbjct 17898 CCTCAACACATGATCATGCGTGTTGCTGTTGGAATCTGGGGTGATGATGTTGAACGTGTC 17957 Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 | ||||| ||| |||| ||| | || ||||||||||| || || | || || ||||| Sbjct 17958 CTGGAGACCTACAACCTCATGT-CGAGCAAGTTCTTCACTCATGCATCCCCAACTCTTTT 18016 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 |||||||||||| | | |||| |||| || ||||| |||| |||||||||||| Sbjct 18017 CAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATATGAAGGATGA 18076 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 |||||||||||| ||||| || || || || ||||| ||||||||| | | || Sbjct 18077 CAGCATTGAGGGTATCTATGACACTCTGAAAACTTGCGCTATGATCTCCAAGATGGCGGG 18136 Query 19342 GGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGA 19400 ||||| || | || ||| | || || | | |||| | || || || | Sbjct 18137 TGGTATTGGCCTGAACGTGCACCGC-ATTCGTGCCACTGGTTCTTACATTGCCGGCACTA 18195 Query 19401 ACGGAGTAGC-CGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 |||| || | ||| ||||||||| || ||||| || || ||||||||||| || | || Sbjct 18196 ACGG--TACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACACTGCTCGTTA 18253 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 ||| ||||||| ||| ||| || || | || || |||||||||||||| ||||| Sbjct 18254 CGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCGAGCCGTGGCA 18313 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 |||||| || | || |||||||| || ||| ||| || || | || || | || Sbjct 18314 CGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGAAGTCCGTGC 18373 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 || || || ||| ||| ||||||| || || || |||||| || ||||| ||| | Sbjct 18374 CCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 18433 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 || || ||| || |||||||| | || |||||||| || | ||| |||||||| Sbjct 18434 CGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACTGTTACGGCGA 18493 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGGTCC 19757 | |||| | | |||||| || || | | |||| || | || | | || Sbjct 18494 TGAGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTCGACTGACTC-TCA 18552 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 |||| | | ||| | |||| || ||| ||||| || | |||| || Sbjct 18553 AAGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTGGTAACCCGTTCA 18612 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGT 19877 || ||||||||| | ||| |||| || ||||||||| | || | ||| Sbjct 18613 TGCTGTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACTATCCGCA 18672 Query 19878 CGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTA 19937 ||||||||||| ||||| || || || | || || ||| ||| || || | Sbjct 18673 GCTCCAACCTGTGCACTGAGATTATTGAATACTGTGCTCCTGATGAGGTTGCTGTCTGCA 18732 Query 19938 ATCTGGCGTCCCTGTGCCTGCC-GACTTTCGTCAAGGCCTC-----CTCCTTCGACTTTG 19991 | || || || || ||| || | |||| | | | | ||| | ||| || Sbjct 18733 ACCTTGCTTCTTTGGCCCTCCCTGCCTTTATTGACTACACCAACAACTCGTACGATTTCC 18792 Query 19992 CCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGA 20051 || || ||||||| ||| ||| || || || ||||| ||| |||||||| | Sbjct 18793 ATAAGCTGCACGAGGTCACCAAGGTTGTTGTTCGCAACCTGAACCGCATCATCGATGTCA 18852 Query 20052 ACTTTTACCCG---ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGA 20108 || ||||| || || || || || ||||| ||||| || |||| Sbjct 18853 ACCACTACCCTGTTACTGAAGCATATAACAGC---AACATGCGTCACCGTCCCATCGGTG 18909 Query 20109 TCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA 20168 |||| || ||||| || ||||||| ||| || || || | | || || | Sbjct 18910 TCGGTGTTCAGGGTCTTGCCGACGCCTTCCTGGCTCTGCGCATGCCCTTTGAGTCGGCTG 18969 Query 20169 AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAAT 20228 |||| ||| ||||||||| ||||||||| || | |||||||| || || || | Sbjct 18970 AGGCCCGCCAGCTCAACACTCATATCTTCGAGACCATTTACCACGCTGCTCTTGAGGCCT 19029 Query 20229 CGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCG 20288 ||||||| | || | |||| ||| |||| ||| | | |||| ||||| | |||| Sbjct 19030 CGTGCGAGATTGCTCAGAAGGAGGGCAAGTACTCGACCTACGAGGGCTCGCCTGTGTCCC 19089 Query 20289 AGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC--GCCCT 20346 |||| ||||| ||| ||||||||| |||||| | ||| | ||| | | ||| Sbjct 19090 AGGGCATCCTGCAGTTTGACATGTGGAATGTCACTCCCAGTGACCTCTGGGACTGGACCT 19149 Query 20347 CA----AGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGC 20402 || ||| |||||||| ||||| | |||||||| || || | |||||||||| Sbjct 19150 CACTGAAGGAACAGATCAAGCAGCACGGTATCCGCAACTCTTTACTACTTGCGCCCATGC 19209 Query 20403 CGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCA 20462 | |||||| || ||||||| |||| || ||||| |||||||| ||||| ||| Sbjct 19210 CCACCGCCAGTACTTCCCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTACACCTCCA 19269 Query 20463 ACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 |||| ||| ||| ||| || || || |||||| Sbjct 19270 ACATTTACCAGCGCCGTGTCCTAGCTGGCGAGTTC 19304 >seq85 Length=66049 Score = 158 bits (174), Expect = 1e-33 Identities = 547/837 (65%), Gaps = 30/837 (4%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | ||| |||||| ||| |||||||||||| || || || | Sbjct 2667 TGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCCAAGGATC 2726 Query 59653 TGAAGGATTGGGACAAGCTCAATTAC---GACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | || ||| |||| | || || ||||||||| || ||| |||||| Sbjct 2727 TCCACGACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTTATCTCCCACATCCTGG 2786 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG- 59768 | ||||| || || ||| || || || | || || | | ||| | |||| | Sbjct 2787 CTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGT--TGAGCGTTTCTCCGC 2844 Query 59769 -GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTAT 59827 || ||||||||| |||||||||| | || || | | ||| | | || || Sbjct 2845 CGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGATGGAAAACAT 2904 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||||||||||| |||||||| | || |||| | ||||||| || | || | Sbjct 2905 TCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGAGCCCGCCCAGCGTTC 2964 Query 59888 TGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 |||||| ||||| || || | ||| ||| || | || || || |||||| Sbjct 2965 CTACCTGTTCAACGCCATTGATACTATTCCCTGCA-TTCGCCGCAAGGCTGACTGGGCCC 3023 Query 59947 TGCAGTGGATGA--GTCCTGGAGCAT-CATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003 || ||||||| | | |||| | | ||||| || |||||| | || ||||| | Sbjct 3024 TGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTG 3083 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 | || || ||||||||||| || | || | || |||||||| |||||||| | Sbjct 3084 TCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTC 3143 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGG 60123 ||||||| || |||| ||||||||||||||||| ||||| || |||||||| || | Sbjct 3144 TCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGGCCTTCACACTG 3203 Query 60124 AGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATT 60179 | ||||| || | |||||| || |||| | | || |||| |||| | ||| Sbjct 3204 ACTTTGC-TTGCCTGCTCTACTCCCACC---TTAACAACCGCCCCAGCAAGCAACTGATT 3259 Query 60180 CACAAGATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCC 60238 | | | | ||| | ||| || | |||| |||||| | || || || || || Sbjct 3260 GAGGACA-TCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCC 3318 Query 60239 ATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGA 60298 || || | || ||| |||| | |||| | |||||| | |||||||| || Sbjct 3319 CTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGAATTTGTCGCCGA 3378 Query 60299 CCG---CCTCATGGCCCAGTTTGGAGAAGGACCA-ATTTACGGCGTGAATAACCCTTTCG 60354 ||| ||| ||||||| | | || ||| | | ||| | | ||||| || | Sbjct 3379 CCGTCTCCTGATGGCCC----TCGGCAACGACAAGGTCTACAAGGCCAGCAACCCCTTTG 3434 Query 60355 ACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCG 60411 ||| ||||||| ||||||| | | || |||||||||||||| |||||||| |||| Sbjct 3435 ACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 3491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516181304080