Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq54 196 5e-45 seq85 123 3e-23 seq142 98.7 1e-15 >seq54 Length=76171 Score = 196 bits (216), Expect = 5e-45 Identities = 379/553 (69%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 53234 CGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCA 53290 ||||||| ||||| ||| || | ||| ||| |||| ||| || || || | ||| Sbjct 17952 CGTGTCCTGGAGACCTACAACCTCATGTCGAGC---AAGTTCTTCACTCATGCATCCCCA 18008 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || || |||||||| ||||| || | || |||| |||||||| |||| ||| Sbjct 18009 ACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATATG 18068 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||||||| || || || ||||| || || || || || || ||||||||| Sbjct 18069 AAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAACTTGCGCTATGATCTCCAAG 18128 Query 53411 TGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAA 53469 | |||||||||| || | || ||| | | | ||||| | || | || Sbjct 18129 ATGGCGGGTGGTATTGGCCTGAACGTGCACCG-CATTCGTGCCACTGGTTCTTACATTGC 18187 Query 53470 GGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 || || ||||| | | | || ||||| |||||||| || || ||||||||||| || Sbjct 18188 CGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACACTGC 18247 Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589 || ||||| |||||||||| ||||| || | || || |||||||||||||| Sbjct 18248 TCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCGAGCC 18307 Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649 ||||||||| || || | ||||| ||||| || || |||||| || | ||||| | Sbjct 18308 GTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGAAGT 18367 Query 53650 GCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || |||||| || || ||||||||||| || || || |||||| | || || Sbjct 18368 CCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGTTGA 18427 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCT 53768 ||| ||| |||||| || |||||||| || |||||||| || || | | ||| | Sbjct 18428 AAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACTGT-T 18486 Query 53769 ACGGTGAGGAGTT 53781 |||| || ||||| Sbjct 18487 ACGGCGATGAGTT 18499 >seq85 Length=66049 Score = 123 bits (136), Expect = 3e-23 Identities = 557/868 (64%), Gaps = 30/868 (3%) Strand=Plus/Minus Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529 |||| ||||| || || ||||||||||| || | | ||||||||||||||| |||| | Sbjct 3491 CGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATAAAGTCAA 3432 Query 74530 AAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGCGA---TC 74584 | ||||| | || ||| | | | | | | || | | ||||| ||| || || Sbjct 3431 AGGGGTTGCTGGCCTTGTAGACCTTGTCGT-TGCCGA----GGGCCATCAGGAGACGGTC 3377 Query 74585 CGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGG 74644 || ||||||| |||||| | |||| | || | |||||| | || || || Sbjct 3376 GGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCACAGGG 3317 Query 74645 CAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCTTGTGA 74702 ||| ||||| || | ||||| |||| | | |||| ||| || | || | | | Sbjct 3316 CAGGGCCTCAGTCAAGAACTCCTTCTCAA--TAGCAACAGCATCGGTGATGATGTCCTCA 3259 Query 74703 ATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTC 74758 || || || |||| || | | ||||| ||||| ||| | || | |||| || Sbjct 3258 ATCAGTTGCTTGCTGGGGCGGTTGT---TAAGGTGGGAGTAGAGCAGGCAAG-CAAAGTC 3203 Query 74759 CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAG 74818 || ||| ||||| | | |||| || || || || | || |||||||| || Sbjct 3202 AGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 3143 Query 74819 TCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 |||||||| || ||| ||||||| || | ||| ||||||||| || ||||| Sbjct 3142 ACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGAC 3083 Query 74879 ACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCCAAGTCTG 74935 | |||||||| || || || || || || | | || | | | ||||| || | Sbjct 3082 AGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAG 3023 Query 74936 AGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTGGAAGAGGCTTG 74994 ||||| ||||| || || || ||||||| |||||| || || | ||| ||| | Sbjct 3022 GGCCCAGTCAGCCTTGCGGC-GAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGG 2964 Query 74995 CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 || |||| ||||||| | | ||||| | || ||||| ||||| || |||| Sbjct 2963 AACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAA 2904 Query 75055 TCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCT 75114 | || | | |||| | | || || | || ||||| | |||||| || || Sbjct 2903 TGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGG 2844 Query 75115 TTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 || ||| | | | ||||| ||||||| ||||| |||||||| || ||||||| Sbjct 2843 CGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCCA 2784 Query 75175 GTACCATTTTGATAAAGTGGCGCTCATC---GTCAGTGAGTTTGTCCCAATCCTTCAGGT 75231 | | ||||||| |||| || || || | |||| ||| || | || | Sbjct 2783 GGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTGGAGAT 2724 Query 75232 CCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAG 75291 || | || ||||||||||||| | ||||||||| | ||||| ||||||| Sbjct 2723 CCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTT 2664 Query 75292 ACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||| | || |||| ||||| || || Sbjct 2663 GCCAGATCTCGTGGTACTTGATGGGGAA 2636 >seq142 Length=50854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 205/301 (68%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||| | || ||||| ||| ||||||| |||||||| ||||||||||||| Sbjct 43313 ACGGCGACAGACGAGTATGAATATAACGAGCCGAAGCAGCATCGGAACCACCAGCAAGAC 43372 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | ||| || | ||||| || || | ||| | |||||||| || ||||||| | Sbjct 43373 GAGAACCAAAGTTACCACTGGGTTCGAGACAGTTGACGTTGTTGGAACCAACAAAGTCCT 43432 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | || | | ||| || ||| || | ||||| || || |||| ||||| Sbjct 43433 GCGCAAGACCAATAATAGTCTGTTGCAGAGATACTTCACCGTGCTGGTACGAAGTCTGAC 43492 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528 ||| || || || |||| || | |||||||| || |||| || ||| |||||| Sbjct 43493 CCGAAACATAACCAGCCAACTCGACAACCTTCATATCCTTGAC--CACGTTGCTCTTGAA 43550 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGA-GGGATCG 117587 |||||| || || |||||||| || | ||||| || |||||| || ||| ||||||| Sbjct 43551 GCAGGCGTACATGACCTTGCGTTGGCCGGGCTTGAGGCCATCCAGGAC-TGACGGGATCG 43609 Query 117588 A 117588 | Sbjct 43610 A 43610 Score = 89.7 bits (98), Expect = 6e-13 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 152782 CCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGC 152841 |||||||| ||||| || || ||||| |||| ||||||||||| | |||| || ||| Sbjct 44086 CCCTTGATATGCGAACCATCGTGATCCTGATCGGCCATGATCATCAAATGACCATAACGC 44145 Query 152842 AGGTCACGTAGTGACCCG--TAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGT 152899 | | | | | || | ||| || ||| | || | || || || | || |||| || Sbjct 44146 AAG-CTCTTGGT-ATCCGTATACACCGTCTTGTGCTTGAGACCCAGAAACTGCTTGATGT 44203 Query 152900 TGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCT 152959 | || ||||| || | ||| | ||| | | | |||||| || || || || || Sbjct 44204 TTTGAATTTCCTGGTTCTTGGTAATCTGATCAAGTGAGGCATCGCGGACGTTCAGCATCT 44263 Query 152960 TTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG-CCTACAA-CGCTCAGACCGGCAAT 153017 | || || ||||| || || ||| | ||| | ||| ||| || ||| | | || |||| Sbjct 44264 TACCACGCAGTGGGAAAACACCG-ATGCGGTCCGGATCTAGAATCGCAC-GTCCAGCAAC 44321 Query 153018 AGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATG 153077 || || | || ||||| ||||| || || | ||| || || || ||||| ||| | Sbjct 44322 GGCTAGAGACTTGGCCGACTCACCTTCTGTCAAAATCAGAGTGCACTCGTGGCCACGACG 44381 Query 153078 AGTACCGGCCCAGTTGGCGTCGTCAAGCTT 153107 | |||| ||| |||||| ||| | ||||| Sbjct 44382 ACTACCAGCCAGGTTGGCATCGACCAGCTT 44411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207401868600