Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq54 233 2e-56
seq30 203 4e-47
seq59 163 3e-35
seq169 150 2e-31
seq85 116 4e-21
seq142 82.4 9e-11
>seq54
Length=76171
Score = 233 bits (258), Expect = 2e-56
Identities = 787/1218 (65%), Gaps = 23/1218 (2%)
Strand=Plus/Minus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||| ||||| |||||||| ||| | || || ||| || | ||| ||||
Sbjct 19115 CCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTT 19056
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
||||||| ||| || | ||| ||||| || ||| || ||||| |||||| ||| ||
Sbjct 19055 GCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAA 18996
Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720
|| |||| | ||| |||| | || || | || || || || |||
Sbjct 18995 GATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAA 18936
Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC 80780
|||| || || |||||||| |||| |||| || ||||| ||| |||| |
Sbjct 18935 GGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATA 18876
Query 80781 GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC 80840
|| || | || ||||| ||| |||||||| ||||||||||||||| ||||||
Sbjct 18875 TGCTTCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAAC 18816
Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCAC-AAATGC 80894
| || || || || || || || || ||| | | ||| | ||| ||| ||
Sbjct 18815 CTTGGTGACCTCGTGCAGCTTATGGAAATCGTACGAGTTGTTGGTGTAGTCAATAAAGGC 18756
Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGAC 80954
|| ||| || || || || ||||| || || ||||| |||| | | | || |
Sbjct 18755 AGGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAAT 18696
Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGC 81014
|| || ||||||| || || || ||||||||||| |||||||| ||||
Sbjct 18695 AATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCG 18636
Query 81015 GTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGAT 81074
|||||| ||||||||| |||| ||||| |||| ||||| ||| | | |||||
Sbjct 18635 GTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGAT 18576
Query 81075 GGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTT 81134
|| | ||| | || | || |||| | || || || |||||||
Sbjct 18575 AGCATACCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTTTCATACTT 18516
Query 81135 GGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGG 81194
|||| | | ||||||| | |||| | |||| || | |||||||| || ||
Sbjct 18515 CTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGG 18456
Query 81195 GCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCA 81254
|||||| || ||| |||| || || || ||| |||||||||| |||||||||||
Sbjct 18455 GCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 18396
Query 81255 GAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTC 81314
|| || ||| || || ||| || | || || | || || || ||| | ||
Sbjct 18395 CAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATC 18336
Query 81315 GAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG 81374
||| || || | | ||||| ||||| ||||| || || | || | | || |
Sbjct 18335 GAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAG---G 18279
Query 81375 ACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428
||| ||||||||||| |||||||| ||||| ||| || ||||||| ||||||
Sbjct 18278 ACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGG 18219
Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CC 81486
| |||||| | || |||||| || || | || || || |||| || | |
Sbjct 18218 AACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCG 18159
Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546
||| || || || || ||||| | | ||| || ||| ||| || ||||
Sbjct 18158 GTGCACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGA 18101
Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606
|| ||||| || ||||| ||||| || | ||||| || | | ||| || ||||
Sbjct 18100 GTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGT 18041
Query 81607 TGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664
| | || | ||| ||||| ||||| || ||||||| || ||| |||| | |
Sbjct 18040 T--GCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGC 17983
Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724
| ||||| |||| ||||| ||| ||| ||| || ||| ||||| || || | ||
Sbjct 17982 TCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCAACAG 17923
Query 81725 CTACACGCATAAACATGT 81742
| |||||||| | |||||
Sbjct 17922 CAACACGCATGATCATGT 17905
>seq30
Length=92847
Score = 203 bits (224), Expect = 4e-47
Identities = 183/230 (80%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| || || |||||||| ||||| || ||||||||| |
Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || ||||||||||||||||| || || || || |||
Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| ||||| || || || | ||||||||| |||||||| ||
Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || ||||| ||||| || | |||||||| ||||| ||
Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTTCGTCTTCGTGGTGGCCA 12705
Score = 154 bits (170), Expect = 2e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||| ||||| || || || || || ||||| || | ||||
Sbjct 12260 GTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTGAC 12319
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || |||||||||||||| || || || || ||||||||||| || |||
Sbjct 12320 AATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGATT 12379
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| || ||||| | ||||||||| |||||||| || | || |||||
Sbjct 12380 TTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGGAG 12439
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| ||||| || | ||||| || |||||
Sbjct 12440 TCTACTCTGCATCTCGTTCTTCGTCTCCGTGGTGG 12474
Score = 136 bits (150), Expect = 5e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || || |||||||| || || | ||| | || | || |
Sbjct 11955 ACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACGTCAAATCC 12014
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||| || |||||||| || || || || ||||||||||| ||||||||||| |||
Sbjct 12015 AAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGAAAG 12074
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || || || | ||| ||||| || ||||| || | || ||||| ||||| |||||
Sbjct 12075 CAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTTCAC 12134
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || |||||||||||
Sbjct 12135 CTGGTCCTCCGCCTTCGCGGTGG 12157
>seq59
Length=73848
Score = 163 bits (180), Expect = 3e-35
Identities = 150/190 (79%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| ||||| || |||||||||||
Sbjct 15633 ATGCAGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 15574
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||| |||||||| ||||||
Sbjct 15573 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 15514
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| || ||||||| |||||||| || ||||| |||
Sbjct 15513 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGACTACAAT 15454
Query 27586 GTCCAAAAGG 27595
|||| ||||
Sbjct 15453 ATCCAGAAGG 15444
>seq169
Length=45351
Score = 150 bits (166), Expect = 2e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| |||||||| || || || ||||| ||||| || ||||| ||||| || | ||
Sbjct 32433 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 32374
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| || | ||| | || || |||||||||||||| || || || ||||||||||| ||
Sbjct 32373 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTG 32314
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| |||||||| ||||| || ||||||| || ||||| || ||||| || |||| |||
Sbjct 32313 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAAG 32254
Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| || || || ||| | ||||| || |||||
Sbjct 32253 GAGTCCACCCTCCACCTGGTCCTCCGTCTGCGTGGTGG 32216
>seq85
Length=66049
Score = 116 bits (128), Expect = 4e-21
Identities = 375/577 (65%), Gaps = 10/577 (2%)
Strand=Plus/Plus
Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356
||||| || | ||||| || | ||| | | |||||||| ||| || |||||||
Sbjct 2636 TTCCCCATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGG 2695
Query 64357 ACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACC---TAAACTCA 64413
|| | ||||||| ||||||| ||||||||||| ||||||| | |||| | ||| |
Sbjct 2696 ACCGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAA 2755
Query 64414 CAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTG 64473
| || ||| ||| ||| |||| || ||||| || | |||||| || ||
Sbjct 2756 GACGAGCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTC 2815
Query 64474 TTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTC 64533
||||| |||| ||| | || || ||||| || ||||| || | ||
Sbjct 2816 AACGAGAACTTGGTTGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTT 2875
Query 64534 TATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGAC 64593
|||| | ||| | | |||| ||||| |||||| || ||||| | |||||
Sbjct 2876 TATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGAT 2935
Query 64594 AAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCC 64653
| | | ||| || | | || ||||||| || || || ||| | |||
Sbjct 2936 ACCTACATCAAGGAGCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCC 2995
Query 64654 GCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGAT----GAATCGTGGGTCGTCGTT 64709
|| |||||||| |||||| | |||||| || | | ||| | ||
Sbjct 2996 TGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAG-GAGTCTACCTT 3054
Query 64710 TGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTG 64769
|| |||||||||| || |||||| ||| || || || ||||| || |||| || ||
Sbjct 3055 TGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTC-GGGTGCTTTTG 3113
Query 64770 T-TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGC 64828
|| || |||||||| ||||| || || ||||| |||||| | || || |||||||
Sbjct 3114 CCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGC 3173
Query 64829 TGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865
||||||| || || ||||| || ||| || |||||
Sbjct 3174 TGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGC 3210
>seq142
Length=50854
Score = 82.4 bits (90), Expect = 9e-11
Identities = 168/247 (68%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GT 32041
||| ||||||||||| || |||||||| || ||||||||| |||||| ||| | ||
Sbjct 43593 GGATGGCCTCAAGCCCGGCCAACGCAAGGTCATGTACGCCTGCTTCAAGAGCAACGTGGT 43534
Query 32042 CGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101
| || || |||||||| | || || | || || || | | || || | || || |
Sbjct 43533 CAAG-GATATGAAGGTTGTCGAGTTGGCTGGTTATGTTTCGGGTCAGACTTCGTACCAGC 43475
Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161
|||| || | || || || || ||| | ||||| ||| ||||||| ||| | |
Sbjct 43474 ACGGTGAAGTATCTCTGCAACAGACTATTATTGGTCTTGCGCAGGACTTTGTTGGTTCCA 43415
Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221
| ||| | |||| ||||| || ||| | ||||| | || || || ||||| |
Sbjct 43414 ACAACGTCAACTGTCTCGAACCCAGTGGTAACTTTGGTTCTCGTCTTGCTGGTGGTTCCG 43355
Query 32222 ATGCTGC 32228
|||||||
Sbjct 43354 ATGCTGC 43348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570301438997840
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