Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq54 233 2e-56 seq30 203 4e-47 seq59 163 3e-35 seq169 150 2e-31 seq85 116 4e-21 seq142 82.4 9e-11 >seq54 Length=76171 Score = 233 bits (258), Expect = 2e-56 Identities = 787/1218 (65%), Gaps = 23/1218 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||| ||||| |||||||| ||| | || || ||| || | ||| |||| Sbjct 19115 CCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTT 19056 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| ||| || | ||| ||||| || ||| || ||||| |||||| ||| || Sbjct 19055 GCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAA 18996 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 || |||| | ||| |||| | || || | || || || || ||| Sbjct 18995 GATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAA 18936 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC 80780 |||| || || |||||||| |||| |||| || ||||| ||| |||| | Sbjct 18935 GGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATA 18876 Query 80781 GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC 80840 || || | || ||||| ||| |||||||| ||||||||||||||| |||||| Sbjct 18875 TGCTTCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAAC 18816 Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCAC-AAATGC 80894 | || || || || || || || || ||| | | ||| | ||| ||| || Sbjct 18815 CTTGGTGACCTCGTGCAGCTTATGGAAATCGTACGAGTTGTTGGTGTAGTCAATAAAGGC 18756 Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGAC 80954 || ||| || || || || ||||| || || ||||| |||| | | | || | Sbjct 18755 AGGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAAT 18696 Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGC 81014 || || ||||||| || || || ||||||||||| |||||||| |||| Sbjct 18695 AATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCG 18636 Query 81015 GTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGAT 81074 |||||| ||||||||| |||| ||||| |||| ||||| ||| | | ||||| Sbjct 18635 GTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGAT 18576 Query 81075 GGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTT 81134 || | ||| | || | || |||| | || || || ||||||| Sbjct 18575 AGCATACCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTTTCATACTT 18516 Query 81135 GGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGG 81194 |||| | | ||||||| | |||| | |||| || | |||||||| || || Sbjct 18515 CTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGG 18456 Query 81195 GCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCA 81254 |||||| || ||| |||| || || || ||| |||||||||| ||||||||||| Sbjct 18455 GCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 18396 Query 81255 GAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTC 81314 || || ||| || || ||| || | || || | || || || ||| | || Sbjct 18395 CAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATC 18336 Query 81315 GAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG 81374 ||| || || | | ||||| ||||| ||||| || || | || | | || | Sbjct 18335 GAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAG---G 18279 Query 81375 ACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428 ||| ||||||||||| |||||||| ||||| ||| || ||||||| |||||| Sbjct 18278 ACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGG 18219 Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CC 81486 | |||||| | || |||||| || || | || || || |||| || | | Sbjct 18218 AACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCG 18159 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 ||| || || || || ||||| | | ||| || ||| ||| || |||| Sbjct 18158 GTGCACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGA 18101 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || ||||| || ||||| ||||| || | ||||| || | | ||| || |||| Sbjct 18100 GTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGT 18041 Query 81607 TGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 | | || | ||| ||||| ||||| || ||||||| || ||| |||| | | Sbjct 18040 T--GCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGC 17983 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724 | ||||| |||| ||||| ||| ||| ||| || ||| ||||| || || | || Sbjct 17982 TCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCAACAG 17923 Query 81725 CTACACGCATAAACATGT 81742 | |||||||| | ||||| Sbjct 17922 CAACACGCATGATCATGT 17905 >seq30 Length=92847 Score = 203 bits (224), Expect = 4e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| ||||| || ||||||||| | Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || ||||||||||||||||| || || || || ||| Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || || || | ||||||||| |||||||| || Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||||| ||||| || | |||||||| ||||| || Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTTCGTCTTCGTGGTGGCCA 12705 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||| ||||| || || || || || ||||| || | |||| Sbjct 12260 GTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTGAC 12319 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || |||||||||||||| || || || || ||||||||||| || ||| Sbjct 12320 AATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGATT 12379 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||| | ||||||||| |||||||| || | || ||||| Sbjct 12380 TTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGGAG 12439 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| ||||| || | ||||| || ||||| Sbjct 12440 TCTACTCTGCATCTCGTTCTTCGTCTCCGTGGTGG 12474 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || |||||||| || || | ||| | || | || | Sbjct 11955 ACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACGTCAAATCC 12014 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || |||||||| || || || || ||||||||||| ||||||||||| ||| Sbjct 12015 AAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGAAAG 12074 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || || || | ||| ||||| || ||||| || | || ||||| ||||| ||||| Sbjct 12075 CAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTTCAC 12134 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||||||||| Sbjct 12135 CTGGTCCTCCGCCTTCGCGGTGG 12157 >seq59 Length=73848 Score = 163 bits (180), Expect = 3e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| ||||| || ||||||||||| Sbjct 15633 ATGCAGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 15574 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| |||||||| |||||| Sbjct 15573 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 15514 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || ||||||| |||||||| || ||||| ||| Sbjct 15513 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGACTACAAT 15454 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 15453 ATCCAGAAGG 15444 >seq169 Length=45351 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| ||||| || ||||| ||||| || | || Sbjct 32433 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 32374 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| || || || ||||||||||| || Sbjct 32373 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTG 32314 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| || ||||||| || ||||| || ||||| || |||| ||| Sbjct 32313 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAAG 32254 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || || ||| | ||||| || ||||| Sbjct 32253 GAGTCCACCCTCCACCTGGTCCTCCGTCTGCGTGGTGG 32216 >seq85 Length=66049 Score = 116 bits (128), Expect = 4e-21 Identities = 375/577 (65%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 ||||| || | ||||| || | ||| | | |||||||| ||| || ||||||| Sbjct 2636 TTCCCCATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGG 2695 Query 64357 ACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACC---TAAACTCA 64413 || | ||||||| ||||||| ||||||||||| ||||||| | |||| | ||| | Sbjct 2696 ACCGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAA 2755 Query 64414 CAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTG 64473 | || ||| ||| ||| |||| || ||||| || | |||||| || || Sbjct 2756 GACGAGCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTC 2815 Query 64474 TTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTC 64533 ||||| |||| ||| | || || ||||| || ||||| || | || Sbjct 2816 AACGAGAACTTGGTTGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTT 2875 Query 64534 TATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGAC 64593 |||| | ||| | | |||| ||||| |||||| || ||||| | ||||| Sbjct 2876 TATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGAT 2935 Query 64594 AAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCC 64653 | | | ||| || | | || ||||||| || || || ||| | ||| Sbjct 2936 ACCTACATCAAGGAGCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCC 2995 Query 64654 GCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGAT----GAATCGTGGGTCGTCGTT 64709 || |||||||| |||||| | |||||| || | | ||| | || Sbjct 2996 TGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAG-GAGTCTACCTT 3054 Query 64710 TGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTG 64769 || |||||||||| || |||||| ||| || || || ||||| || |||| || || Sbjct 3055 TGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTC-GGGTGCTTTTG 3113 Query 64770 T-TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGC 64828 || || |||||||| ||||| || || ||||| |||||| | || || ||||||| Sbjct 3114 CCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGC 3173 Query 64829 TGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 ||||||| || || ||||| || ||| || ||||| Sbjct 3174 TGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGC 3210 >seq142 Length=50854 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GT 32041 ||| ||||||||||| || |||||||| || ||||||||| |||||| ||| | || Sbjct 43593 GGATGGCCTCAAGCCCGGCCAACGCAAGGTCATGTACGCCTGCTTCAAGAGCAACGTGGT 43534 Query 32042 CGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 | || || |||||||| | || || | || || || | | || || | || || | Sbjct 43533 CAAG-GATATGAAGGTTGTCGAGTTGGCTGGTTATGTTTCGGGTCAGACTTCGTACCAGC 43475 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || | || || || || ||| | ||||| ||| ||||||| ||| | | Sbjct 43474 ACGGTGAAGTATCTCTGCAACAGACTATTATTGGTCTTGCGCAGGACTTTGTTGGTTCCA 43415 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||| | |||| ||||| || ||| | ||||| | || || || ||||| | Sbjct 43414 ACAACGTCAACTGTCTCGAACCCAGTGGTAACTTTGGTTCTCGTCTTGCTGGTGGTTCCG 43355 Query 32222 ATGCTGC 32228 ||||||| Sbjct 43354 ATGCTGC 43348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301438997840