Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq30 100 2e-16 >seq30 Length=92847 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | |||| ||| ||||| |||||| || ||||| || |||| Sbjct 12703 GCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 12644 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||||||||| || || || ||||| || | |||||| || ||||| || Sbjct 12643 CAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12584 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| || | || || | ||| ||||| | |||| | Sbjct 12583 GATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAA 12525 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || || || | || || ||||| || ||||| Sbjct 12524 CCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724778440881