Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq30 105 6e-18
>seq30
Length=92847
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || || || ||||| ||| | || || || ||||| || | || ||| | |||||
Sbjct 12260 GTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTGAC 12319
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| ||||| || ||||| ||||| |||||||| || || || || ||||| | ||
Sbjct 12320 AATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGATT 12379
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| ||| ||||| || |||| ||| || ||| | | || ||||||||||| ||||||
Sbjct 12380 TTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGGAG 12439
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || | ||| | ||| | ||| | || ||||| ||
Sbjct 12440 TCTACTCTGCATCTCGTTCTTCGTCTCCGTGGTGGTAT 12477
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
|| |||||| | || || || || || ||| |||| ||| | || || | ||||||
Sbjct 11955 ACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACGTCAAATCC 12014
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| |||||||| || || || || || || ||||| |||||| | || | || || ||
Sbjct 12015 AAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGAAAG 12074
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | |||||| || ||| || | || ||||||||||| |||||||| ||| | ||
Sbjct 12075 CAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTTCAC 12134
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| | || | || ||||| ||
Sbjct 12135 CTGGTCCTCCGCCTTCGCGGTGGTAT 12160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434911566344640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |