Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq54 176 6e-39
>seq54
Length=76171
Score = 176 bits (194), Expect = 6e-39
Identities = 452/684 (66%), Gaps = 12/684 (2%)
Strand=Plus/Minus
Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818
|||||| ||||| || | ||||| ||||| ||||| |||||| || || || ||
Sbjct 18668 GATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAA 18609
Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA- 77877
||| | || || ||| |||| | ||| | |||| | ||| | | ||||| |
Sbjct 18608 CGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAG 18549
Query 77878 --TCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTC 77932
||| | || || | ||| ||||||| | ||| | ||| || || ||
Sbjct 18548 AGTCAGTCGACCA----CGACCCTCCTTTTCATACTTCTCGTACAATGCC--TCGAACTC 18495
Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992
||| || || ||| ||| |||||||| ||||| |||||||| | | ||| || |
Sbjct 18494 ATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGC 18435
Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052
| | | ||| || ||||| || |||||||| ||||| ||||| | || ||||| ||
Sbjct 18434 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACG 18375
Query 78053 GGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112
|| | |||||| || || |||||| |||||||| ||||| | || ||| |
Sbjct 18374 GGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGC 18315
Query 78113 ATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172
||||| || || || || || || | | | ||||| || || || || ||||| || |
Sbjct 18314 GTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAAC 18255
Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATT 78232
|| | || ||||| || | || | || ||| |||| |||||||| || || || ||
Sbjct 18254 GTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTT 18195
Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCC 78292
|| || | ||| ||| ||| | || ||||| | | | || || || ||
Sbjct 18194 AGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAATACCACC 18135
Query 78293 TGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTC 78352
|||||||| || || | ||||||| ||||| || || ||||||||||| || |||||
Sbjct 18134 CGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTC 18075
Query 78353 ATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 78412
|||| |||| | | || || || ||||| ||| || ||| || || || ||
Sbjct 18074 ATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAA 18015
Query 78413 TAATGTCGGAGATGCATGCGTAAA 78436
| || || |||||||| || ||
Sbjct 18014 AAGAGTTGGGGATGCATGAGTGAA 17991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694657885016480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |