Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq54 176 6e-39 >seq54 Length=76171 Score = 176 bits (194), Expect = 6e-39 Identities = 452/684 (66%), Gaps = 12/684 (2%) Strand=Plus/Minus Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818 |||||| ||||| || | ||||| ||||| ||||| |||||| || || || || Sbjct 18668 GATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAA 18609 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA- 77877 ||| | || || ||| |||| | ||| | |||| | ||| | | ||||| | Sbjct 18608 CGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAG 18549 Query 77878 --TCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTC 77932 ||| | || || | ||| ||||||| | ||| | ||| || || || Sbjct 18548 AGTCAGTCGACCA----CGACCCTCCTTTTCATACTTCTCGTACAATGCC--TCGAACTC 18495 Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992 ||| || || ||| ||| |||||||| ||||| |||||||| | | ||| || | Sbjct 18494 ATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGC 18435 Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 | | | ||| || ||||| || |||||||| ||||| ||||| | || ||||| || Sbjct 18434 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACG 18375 Query 78053 GGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112 || | |||||| || || |||||| |||||||| ||||| | || ||| | Sbjct 18374 GGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGC 18315 Query 78113 ATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172 ||||| || || || || || || | | | ||||| || || || || ||||| || | Sbjct 18314 GTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAAC 18255 Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATT 78232 || | || ||||| || | || | || ||| |||| |||||||| || || || || Sbjct 18254 GTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTT 18195 Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCC 78292 || || | ||| ||| ||| | || ||||| | | | || || || || Sbjct 18194 AGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAATACCACC 18135 Query 78293 TGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTC 78352 |||||||| || || | ||||||| ||||| || || ||||||||||| || ||||| Sbjct 18134 CGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTC 18075 Query 78353 ATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 78412 |||| |||| | | || || || ||||| ||| || ||| || || || || Sbjct 18074 ATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAA 18015 Query 78413 TAATGTCGGAGATGCATGCGTAAA 78436 | || || |||||||| || || Sbjct 18014 AAGAGTTGGGGATGCATGAGTGAA 17991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657885016480