Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq54 199 6e-46 seq85 93.3 6e-14 >seq54 Length=76171 Score = 199 bits (220), Expect = 6e-46 Identities = 636/972 (65%), Gaps = 32/972 (3%) Strand=Plus/Minus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA---TATTGTATT 76327 || || | ||| || || || || || || ||||||| || | ||| |||| || Sbjct 18751 AGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGA---GCACAGTATTCAATA 18695 Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| || || | |||||| || || || | ||||| ||||| | Sbjct 18694 ATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGG 18635 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || || |||||| || || | ||||| | ||||| ||| |||| | ||| | ||| Sbjct 18634 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATA 18575 Query 76448 GATTTCCAGACGACTCTAGCTTTTA---TTATAGATTT-GT--ATCGCTTCTCTC--TTT 76499 | || || || ||||||| || ||| | || | | | | ||| ||| Sbjct 18574 G-----CATACCAC---AGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTTT 18523 Query 76500 CATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 |||| || | ||| | || || || ||||| || || ||| ||| |||||| || Sbjct 18522 CATACTTCTCGTACAATGCC--TCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCA 18465 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 ||||| || ||||| | | |||||| | | | | ||| || ||||| || ||||| Sbjct 18464 CTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATC 18405 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 ||| ||||| ||||| | || ||||| |||| | |||||| || || |||||| Sbjct 18404 AGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTT 18345 Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737 ||||| |||||||| | || ||| | ||||| || || || || || || | | | Sbjct 18344 GCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGC 18285 Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797 ||| || || || || || ||||| || | || | |||||||| || | || | || Sbjct 18284 ACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAG 18225 Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||| |||| || ||||| || ||||| || || || | ||| ||| ||| ||||| Sbjct 18224 CATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACG 18165 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 ||| | ||||| || || || ||||| || ||||| | ||| || ||| Sbjct 18164 AATGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTT 18105 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 || ||||||||||| ||||| || || |||||| |||| | | || || || ||| Sbjct 18104 CAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGA 18045 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 || ||| || ||| || || || || | || || |||||||||||||| | || Sbjct 18044 CAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTT 17985 Query 77038 TTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTA 77096 || | || ||||| || || | || ||| | ||| || | ||||| | Sbjct 17984 GCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAA 17926 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 |||| |||||||| | ||| || ||||| || || || |||| | | |||| | Sbjct 17925 CAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGA 17866 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTA 77214 |||||| || | || || |||||||| || | ||| ||||| || | ||||| Sbjct 17865 GGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTA 17808 Query 77215 AATAATAACCGA 77226 | ||| |||| Sbjct 17807 CACGATAGCCGA 17796 >seq85 Length=66049 Score = 93.3 bits (102), Expect = 6e-14 Identities = 368/578 (64%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||| |||||||| ||||| | || | ||||| || || || || Sbjct 3213 CAAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGA 3154 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || |||||||| ||||| || || | || |||| || || ||||| Sbjct 3153 CCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAG 3094 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA--- 46806 || || || ||||| || || || || || | || | | | | || || | Sbjct 3093 ATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCG 3034 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | | ||||| |||||||| | || || || || || || || || Sbjct 3033 ATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTG 2974 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || || || | | || || | || ||||| || | || || | Sbjct 2973 AACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTC 2914 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || ||||||||||| || ||||| || || ||||| || | || || | |||| Sbjct 2913 TCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATC 2854 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || ||||| | | || || ||| ||| ||||| || || || || ||| || ||| Sbjct 2853 TGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCA 2794 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAG 47103 || || |||| | || ||||| | | || || | ||| | || |||||| Sbjct 2793 AAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAG 2734 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 || | || ||| || || | ||| | || || || |||||||| || ||||| || || Sbjct 2733 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTC 2674 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAA 47201 || ||||| | ||| || || | || | ||| || || Sbjct 2673 TTGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923198018240