Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq54 199 6e-46
seq85 93.3 6e-14
>seq54
Length=76171
Score = 199 bits (220), Expect = 6e-46
Identities = 636/972 (65%), Gaps = 32/972 (3%)
Strand=Plus/Minus
Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA---TATTGTATT 76327
|| || | ||| || || || || || || ||||||| || | ||| |||| ||
Sbjct 18751 AGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGA---GCACAGTATTCAATA 18695
Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387
||||| ||||| || || | |||||| || || || | ||||| ||||| |
Sbjct 18694 ATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGG 18635
Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447
|| || |||||| || || | ||||| | ||||| ||| |||| | ||| | |||
Sbjct 18634 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATA 18575
Query 76448 GATTTCCAGACGACTCTAGCTTTTA---TTATAGATTT-GT--ATCGCTTCTCTC--TTT 76499
| || || || ||||||| || ||| | || | | | | ||| |||
Sbjct 18574 G-----CATACCAC---AGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTTT 18523
Query 76500 CATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557
|||| || | ||| | || || || ||||| || || ||| ||| |||||| ||
Sbjct 18522 CATACTTCTCGTACAATGCC--TCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCA 18465
Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617
||||| || ||||| | | |||||| | | | | ||| || ||||| || |||||
Sbjct 18464 CTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATC 18405
Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677
||| ||||| ||||| | || ||||| |||| | |||||| || || ||||||
Sbjct 18404 AGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTT 18345
Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737
||||| |||||||| | || ||| | ||||| || || || || || || | | |
Sbjct 18344 GCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGC 18285
Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797
||| || || || || || ||||| || | || | |||||||| || | || | ||
Sbjct 18284 ACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAG 18225
Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857
||| |||| || ||||| || ||||| || || || | ||| ||| ||| |||||
Sbjct 18224 CATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACG 18165
Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917
||| | ||||| || || || ||||| || ||||| | ||| || |||
Sbjct 18164 AATGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTT 18105
Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977
|| ||||||||||| ||||| || || |||||| |||| | | || || || |||
Sbjct 18104 CAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGA 18045
Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037
|| ||| || ||| || || || || | || || |||||||||||||| | ||
Sbjct 18044 CAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTT 17985
Query 77038 TTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTA 77096
|| | || ||||| || || | || ||| | ||| || | ||||| |
Sbjct 17984 GCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAA 17926
Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156
|||| |||||||| | ||| || ||||| || || || |||| | | |||| |
Sbjct 17925 CAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGA 17866
Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTA 77214
|||||| || | || || |||||||| || | ||| ||||| || | |||||
Sbjct 17865 GGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTA 17808
Query 77215 AATAATAACCGA 77226
| ||| ||||
Sbjct 17807 CACGATAGCCGA 17796
>seq85
Length=66049
Score = 93.3 bits (102), Expect = 6e-14
Identities = 368/578 (64%), Gaps = 6/578 (1%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| ||||| ||| |||||||| ||||| | || | ||||| || || || ||
Sbjct 3213 CAAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGA 3154
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|||||||| || |||||||| ||||| || || | || |||| || || |||||
Sbjct 3153 CCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAG 3094
Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA--- 46806
|| || || ||||| || || || || || | || | | | | || || |
Sbjct 3093 ATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCG 3034
Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866
|||||| | | ||||| |||||||| | || || || || || || || ||
Sbjct 3033 ATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTG 2974
Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926
|| || || | | || || | || ||||| || | || || |
Sbjct 2973 AACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTC 2914
Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986
|| || ||||||||||| || ||||| || || ||||| || | || || | ||||
Sbjct 2913 TCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATC 2854
Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046
|| ||||| | | || || ||| ||| ||||| || || || || ||| || |||
Sbjct 2853 TGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCA 2794
Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAG 47103
|| || |||| | || ||||| | | || || | ||| | || ||||||
Sbjct 2793 AAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAG 2734
Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163
|| | || ||| || || | ||| | || || || |||||||| || ||||| || ||
Sbjct 2733 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTC 2674
Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAA 47201
|| ||||| | ||| || || | || | ||| || ||
Sbjct 2673 TTGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712923198018240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |