Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq30 114 3e-20
seq169 93.3 1e-13
seq59 86.0 1e-11
>seq30
Length=92847
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| ||||||||||| || ||||||||||| || || | || | || |||
Sbjct 12687 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCT 12628
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || || || || | |||||| |||| | ||| || ||||| |
Sbjct 12627 TCAAGCTGCTTT--CCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGT 12570
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || |||||| | || | |||| || |||| || || || ||||| |
Sbjct 12569 CCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGG 12510
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || |||||||| || |||| |||||
Sbjct 12509 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 98.7 bits (108), Expect = 2e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| ||||||||||| || || |||||||| || || | || | || ||
Sbjct 12459 AGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCC 12400
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || ||||| || || | ||||||||| | | ||| |||||||| ||
Sbjct 12399 TCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 12340
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || |||||| | || | |||| || ||| ||||| || || || ||
Sbjct 12339 TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTC 12280
Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094
|| || ||||| ||||| ||||
Sbjct 12279 TTTCCGGTGAGGGTCTTGACGA 12258
>seq169
Length=45351
Score = 93.3 bits (102), Expect = 1e-13
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || || || ||||| || ||||||||||| || || | || | |||||
Sbjct 32230 GAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATC 32289
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | ||||||||||| | ||| || ||||| ||
Sbjct 32290 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 32349
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | |||| || ||| || || || ||||| ||
Sbjct 32350 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGT 32409
Query 152072 TTTGCCCGTGAGAGTCTTCACGAA 152095
|| ||||| || ||||| |||||
Sbjct 32410 CTTACCCGTCAGGGTCTTGACGAA 32433
>seq59
Length=73848
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/206 (69%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 151904 AAGAGTAGACT--CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
||| ||| ||| | || ||||| ||||| || || | || | ||||| || ||
Sbjct 15431 AAGGGTAAACTGACCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGC 15490
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || ||||| || | ||||||||||| | || || ||||| || || || ||
Sbjct 15491 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 15550
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|||||| | || | | |||| || ||| || || || ||||| || || |||||
Sbjct 15551 GACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTT 15610
Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| ||||| | |||||| ||
Sbjct 15611 AGGGTCTTGACGAAAATCTGCATCTT 15636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153802217355447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |