Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq30 114 3e-20 seq169 93.3 1e-13 seq59 86.0 1e-11 >seq30 Length=92847 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| || ||||||||||| || || | || | || ||| Sbjct 12687 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCT 12628 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || || || | |||||| |||| | ||| || ||||| | Sbjct 12627 TCAAGCTGCTTT--CCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGT 12570 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || |||||| | || | |||| || |||| || || || ||||| | Sbjct 12569 CCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGG 12510 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||| || |||| ||||| Sbjct 12509 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| || || |||||||| || || | || | || || Sbjct 12459 AGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCC 12400 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | ||||||||| | | ||| |||||||| || Sbjct 12399 TCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 12340 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | |||| || ||| ||||| || || || || Sbjct 12339 TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTC 12280 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 || || ||||| ||||| |||| Sbjct 12279 TTTCCGGTGAGGGTCTTGACGA 12258 >seq169 Length=45351 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| || || | || | ||||| Sbjct 32230 GAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATC 32289 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||||| | ||| || ||||| || Sbjct 32290 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 32349 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | |||| || ||| || || || ||||| || Sbjct 32350 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGT 32409 Query 152072 TTTGCCCGTGAGAGTCTTCACGAA 152095 || ||||| || ||||| ||||| Sbjct 32410 CTTACCCGTCAGGGTCTTGACGAA 32433 >seq59 Length=73848 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 151904 AAGAGTAGACT--CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||| ||| ||| | || ||||| ||||| || || | || | ||||| || || Sbjct 15431 AAGGGTAAACTGACCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGC 15490 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| || | ||||||||||| | || || ||||| || || || || Sbjct 15491 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 15550 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | |||| || ||| || || || ||||| || || ||||| Sbjct 15551 GACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTT 15610 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||||| | |||||| || Sbjct 15611 AGGGTCTTGACGAAAATCTGCATCTT 15636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153802217355447