Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq169 179 8e-40
seq59 156 9e-33
seq30 134 3e-26
seq85 100 6e-16
>seq169
Length=45351
Score = 179 bits (198), Expect = 8e-40
Identities = 171/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || ||||| || | ||| || || |||||||||||||| ||
Sbjct 32215 ACCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 32274
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||||| || || ||||| ||
Sbjct 32275 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 32334
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | ||||| |||||||| | |||||
Sbjct 32335 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 32394
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || ||||||||||||| ||||| |||||
Sbjct 32395 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 32433
>seq59
Length=73848
Score = 156 bits (172), Expect = 9e-33
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| ||||| |||||||| || || || ||||||||||| || || || || |||||||||
Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 15505
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 15506 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15565
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|| |||||||| | || || ||||| || |||||||||||||| | ||||| |||||
Sbjct 15566 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGAAA 15625
Query 283092 ATCTGCATTTTCATATACA 283110
|||||||| || | ||||
Sbjct 15626 ATCTGCATCTTGACCTACA 15644
>seq30
Length=92847
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || ||||| || | ||| || || || ||||||||||| ||
Sbjct 12158 ACCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 12099
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || || || || || || || ||||| || | ||| || || || ||
Sbjct 12098 AAGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12039
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| ||||| ||||| | ||| ||| | ||||| ||||| || | ||| ||
Sbjct 12038 GATACCCTCCTTATCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAAC 11979
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| || ||
Sbjct 11978 CTCGAGGGTGATGGTCTTGCCAGT 11955
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || ||||| |||||||| | || || || |||||||||||||| ||
Sbjct 12702 CCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCC 12643
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || || || || || || || ||||| || | ||| || || || ||
Sbjct 12642 AGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 12583
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || || | || ||||||||||| | || ||
Sbjct 12582 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACC 12523
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || |||| |||||| || || || |||||
Sbjct 12522 TCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 127 bits (140), Expect = 4e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| || ||||| | || || || || ||||||||||| ||
Sbjct 12475 ACCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGC 12416
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || ||||| || || || || || || |||| || || |||||| ||
Sbjct 12415 CAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGG 12356
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || |||||||| || ||||| | || || | || ||||||||||| | |||||
Sbjct 12355 GATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGAC 12296
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
||| || ||||| ||||| || || | ||||| ||||
Sbjct 12295 TTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 12258
>seq85
Length=66049
Score = 100 bits (110), Expect = 6e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| || | ||||| | ||| ||||||||| | || || | || ||
Sbjct 3266 ATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCC 3325
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| | |||||||| || || |||||| | || || ||||| || || || ||| |
Sbjct 3326 CTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTC 3385
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
| |||| || || |||| || || || || ||| |||||||| | |||||||||
Sbjct 3386 CTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAG 3445
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || || || || || ||||||||||| ||||||||| ||| || |||| |
Sbjct 3446 AACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAAG 3505
Query 230403 CCCGGTGT 230410
|||||||
Sbjct 3506 GCCGGTGT 3513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046722341938078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |