Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq169 127 1e-24
seq59 120 2e-22
seq30 114 9e-21
>seq169
Length=45351
Score = 127 bits (140), Expect = 1e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| ||||||||||| || || || ||| | || ||
Sbjct 32234 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 32293
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| |||||||| || | || | ||| ||||| |||
Sbjct 32294 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 32353
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||| | ||| || ||||||| ||||| |||||
Sbjct 32354 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTA 32413
Query 44309 CCCGTGAGGGTCTTCACGAA 44328
||||| |||||||| |||||
Sbjct 32414 CCCGTCAGGGTCTTGACGAA 32433
>seq59
Length=73848
Score = 120 bits (132), Expect = 2e-22
Identities = 143/192 (74%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||| ||||| || || || || | || ||||||||||| || |||||||
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | ||| | || ||||| ||| ||||| ||| || |||
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | ||| || ||||| | ||||||||||| ||||| |||||||| ||
Sbjct 15564 --CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGAC 15621
Query 44326 GAAGATTTGCAT 44337
||| || |||||
Sbjct 15622 GAAAATCTGCAT 15633
>seq30
Length=92847
Score = 114 bits (126), Expect = 9e-21
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| || || || |||||| ||||||||||| || || || || |||| ||
Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||| || | |||||||||||| | || | || ||||| |||
Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||| | || || ||||||| ||||| ||||
Sbjct 12564 ATCTTGGACTTGACATTGT--CAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCT 12507
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || ||||| || |||||||||||
Sbjct 12506 TGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 102 bits (112), Expect = 6e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||||||| ||| |||||| || |||||||| || || || ||| |||| ||
Sbjct 12139 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCA 12080
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||| || | |||||||||||| | || | ||| ||||| ||
Sbjct 12079 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGA 12020
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| | || | ||| | |||||||| | ||||| ||||| | || || |||||
Sbjct 12019 ATCTT-GGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTT 11961
Query 44308 TCCCGTGA 44315
|| ||||
Sbjct 11960 GCCAGTGA 11953
Score = 96.9 bits (106), Expect = 2e-15
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| || |||||||| || || || || |||| ||||||||||| || || ||
Sbjct 12439 CTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAA 12380
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263
|||| |||||||| || | || | |||||||| ||| ||||| ||| || |
Sbjct 12379 AATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 12320
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323
|| | || ||||| | ||| || || || | || || |||||||| |||||||||||
Sbjct 12319 GT--CAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTG 12262
Query 44324 ACGA 44327
||||
Sbjct 12261 ACGA 12258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359984885059569
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |