Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq169 127 1e-24 seq59 120 2e-22 seq30 114 9e-21 >seq169 Length=45351 Score = 127 bits (140), Expect = 1e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| || || || ||| | || || Sbjct 32234 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 32293 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||||| || | || | ||| ||||| ||| Sbjct 32294 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 32353 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | ||| || ||||||| ||||| ||||| Sbjct 32354 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTA 32413 Query 44309 CCCGTGAGGGTCTTCACGAA 44328 ||||| |||||||| ||||| Sbjct 32414 CCCGTCAGGGTCTTGACGAA 32433 >seq59 Length=73848 Score = 120 bits (132), Expect = 2e-22 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||| ||||| || || || || | || ||||||||||| || ||||||| Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | ||| | || ||||| ||| ||||| ||| || ||| Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | ||||||||||| ||||| |||||||| || Sbjct 15564 --CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGAC 15621 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 15622 GAAAATCTGCAT 15633 >seq30 Length=92847 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || |||||| ||||||||||| || || || || |||| || Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||| || | |||||||||||| | || | || ||||| ||| Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||| | || || ||||||| ||||| |||| Sbjct 12564 ATCTTGGACTTGACATTGT--CAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCT 12507 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| || ||||||||||| Sbjct 12506 TGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 102 bits (112), Expect = 6e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| ||| |||||| || |||||||| || || || ||| |||| || Sbjct 12139 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCA 12080 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||| || | |||||||||||| | || | ||| ||||| || Sbjct 12079 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGA 12020 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| | || | ||| | |||||||| | ||||| ||||| | || || ||||| Sbjct 12019 ATCTT-GGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTT 11961 Query 44308 TCCCGTGA 44315 || |||| Sbjct 11960 GCCAGTGA 11953 Score = 96.9 bits (106), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || |||||||| || || || || |||| ||||||||||| || || || Sbjct 12439 CTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAA 12380 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 |||| |||||||| || | || | |||||||| ||| ||||| ||| || | Sbjct 12379 AATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 12320 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || ||||| | ||| || || || | || || |||||||| ||||||||||| Sbjct 12319 GT--CAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTG 12262 Query 44324 ACGA 44327 |||| Sbjct 12261 ACGA 12258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984885059569