Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq30 140 8e-28 seq59 132 1e-25 seq169 129 1e-24 >seq30 Length=92847 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || || ||||| ||||| || | ||| ||| Sbjct 12479 CAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCGGAC 12538 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || ||||| ||||| ||||| Sbjct 12539 ACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAGCAG 12598 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || ||||| ||||| ||||| || | || || || || || ||| || Sbjct 12599 CGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAACATC 12658 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||||| ||| Sbjct 12659 CAGAAGGAGTCTACTCTGCATCTGGTT 12685 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| ||| |||||||||||||| ||||||||| Sbjct 11953 TCACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACGTCAAAT 12012 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||| || || || || ||||| ||||| ||||| || || || || || |||| Sbjct 12013 CCAAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGAA 12072 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| ||||| || | || ||||| || || ||| | || || || || || || | Sbjct 12073 AGCAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTTC 12132 Query 178123 ATCTTGT 178129 | || || Sbjct 12133 ACCTGGT 12139 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| ||||| || |||||||| || || || ||| ||||| || | Sbjct 12258 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTG 12317 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| |||||||||||||| ||||| ||||| || |||||||| || || | Sbjct 12318 ACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGA 12377 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || || ||||| || || || | || || || || || ||| | || || | Sbjct 12378 TTTTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGG 12437 Query 178111 AATCAACACTGCATCTTGTT 178130 | || || |||||||| ||| Sbjct 12438 AGTCTACTCTGCATCTCGTT 12457 >seq59 Length=73848 Score = 132 bits (146), Expect = 1e-25 Identities = 149/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||| |||||||||| Sbjct 15641 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGG 15585 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||||||||| || ||||| ||||| |||||||| || || || | Sbjct 15584 TTGAGTCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTC 15525 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||||||||| || || ||||| || || || ||||| || ||||| | || || | Sbjct 15524 CTCCGGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGG 15465 Query 178090 CCGATTATAACGTCCAAAA 178108 | || || || |||| || Sbjct 15464 CGGACTACAATATCCAGAA 15446 >seq169 Length=45351 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || || ||||| ||||| || ||| ||||| || Sbjct 32434 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGAT 32375 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| |||||||| || || ||||| ||||||||||| || || Sbjct 32374 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCT 32315 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| || ||||| | || || || || || ||| |||| || Sbjct 32314 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAA 32255 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 32254 GGAGTCCACCCTCCACCTGGT 32234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711813532858