Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq30 140 8e-28
seq59 132 1e-25
seq169 129 1e-24
>seq30
Length=92847
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || ||||| || || || || || ||||| ||||| || | ||| |||
Sbjct 12479 CAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCGGAC 12538
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| |||||||||||||| || || ||||| ||||| |||||
Sbjct 12539 ACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAGCAG 12598
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || ||||| ||||| ||||| || | || || || || || ||| ||
Sbjct 12599 CGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAACATC 12658
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || |||||||| |||
Sbjct 12659 CAGAAGGAGTCTACTCTGCATCTGGTT 12685
Score = 134 bits (148), Expect = 3e-26
Identities = 142/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 11953 TCACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACGTCAAAT 12012
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||| || || || || ||||| ||||| ||||| || || || || || ||||
Sbjct 12013 CCAAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGAA 12072
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| ||||| || | || ||||| || || ||| | || || || || || || |
Sbjct 12073 AGCAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTTC 12132
Query 178123 ATCTTGT 178129
| || ||
Sbjct 12133 ACCTGGT 12139
Score = 131 bits (144), Expect = 4e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| ||||| || |||||||| || || || ||| ||||| || |
Sbjct 12258 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTG 12317
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| |||||||||||||| ||||| ||||| || |||||||| || || |
Sbjct 12318 ACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGA 12377
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| ||||| || || ||||| || || || | || || || || || ||| | || || |
Sbjct 12378 TTTTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGG 12437
Query 178111 AATCAACACTGCATCTTGTT 178130
| || || |||||||| |||
Sbjct 12438 AGTCTACTCTGCATCTCGTT 12457
>seq59
Length=73848
Score = 132 bits (146), Expect = 1e-25
Identities = 149/199 (75%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 15641 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGG 15585
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||||||||| || ||||| ||||| |||||||| || || || |
Sbjct 15584 TTGAGTCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTC 15525
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
||||||||||||| || || ||||| || || || ||||| || ||||| | || || |
Sbjct 15524 CTCCGGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGG 15465
Query 178090 CCGATTATAACGTCCAAAA 178108
| || || || |||| ||
Sbjct 15464 CGGACTACAATATCCAGAA 15446
>seq169
Length=45351
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 32434 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGAT 32375
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || ||||| ||||||||||| || ||
Sbjct 32374 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCT 32315
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| || ||||| | || || || || || ||| |||| ||
Sbjct 32314 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAA 32255
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || || ||
Sbjct 32254 GGAGTCCACCCTCCACCTGGT 32234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203711813532858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |