Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq169 138 1e-27
seq59 125 7e-24
seq30 118 1e-21
>seq169
Length=45351
Score = 138 bits (152), Expect = 1e-27
Identities = 164/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| |
Sbjct 32216 CCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 32275
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| || || ||||||||||| ||||||| |||
Sbjct 32276 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 32335
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| ||||| ||
Sbjct 32336 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATCGTGTCCGAGGACTCGAC 32394
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
||||| || || || ||||||||||| ||||| ||||||
Sbjct 32395 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434
>seq59
Length=73848
Score = 125 bits (138), Expect = 7e-24
Identities = 146/195 (75%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| || || ||||| | ||||| || | || || ||||||||||| || || |
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||| ||||||| |||| || |||||||||| ||| || ||| || |
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || ||||| |||||||| || ||||| ||
Sbjct 15564 CG--ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGAC 15621
Query 41851 GAAAATCTGCATGTT 41865
|||||||||||| ||
Sbjct 15622 GAAAATCTGCATCTT 15636
>seq30
Length=92847
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||||||||| || ||||||||| ||||| ||||| |
Sbjct 12703 GCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 12644
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || |||| || |||||||| || || || || || ||||| || |||| |||
Sbjct 12643 CAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12584
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || | | || | | | |||||| | ||| |
Sbjct 12583 GATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAA 12525
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || ||||| ||||| || || || |||||
Sbjct 12524 CCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 116 bits (128), Expect = 3e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| || ||||||||||||||| ||||| |
Sbjct 12474 CCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCC 12415
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||| ||||| ||||||||||| ||||| | |||
Sbjct 12414 AGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 12355
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| | || | | || | | | |||||| ||||| ||
Sbjct 12354 ATGCCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGAC 12296
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
|| | || || || || || || || ||||| ||||
Sbjct 12295 TTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 12258
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||||| || || ||| ||||||||||||||| ||||| |
Sbjct 12157 CCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 12098
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || |||||||| || || || || || ||||| || |||| |||
Sbjct 12097 AGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 12038
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||| ||
Sbjct 12037 ATACCCTCCTTATC 12024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462296736048400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |