Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq545 206 3e-48
>seq545
Length=97716
Score = 206 bits (228), Expect = 3e-48
Identities = 641/981 (65%), Gaps = 36/981 (4%)
Strand=Plus/Plus
Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769
|||||| || || || || || ||||||| || | ||| | || |||||||||||
Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
|| ||| | ||||| |||| ||||| ||||| ||||| ||| || ||
Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
|| ||||| ||||| || | ||||||||| |||||| ||| | ||| || | ||| |
Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAG 74471
Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAAT 53947
| ||||| | | || | | | | ||| ||| ||| | | |||||
Sbjct 74472 CTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAGA 74529
Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAA 54006
|||||||| || || | || | | |||| || || ||||||| || ||||| |
Sbjct 74530 GCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGAG 74588
Query 54007 CGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063
|| ||| || |||| |||| || || ||||| || || ||| ||||| || ||
Sbjct 74589 CGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGC 74645
Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123
| |||||| || | | | ||| || ||||| ||||| || ||||||||
Sbjct 74646 CAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAA 74705
Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183
| | | | ||||| |||||| || || | ||| || | | |||| || || |||||
Sbjct 74706 CTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTT 74765
Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243
||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| ||
Sbjct 74766 TCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCC 74825
Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATT 54301
|| || | ||| || || || | || ||| ||| ||||||||||| | |||
Sbjct 74826 GTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATT 74885
Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361
| ||||| || || || ||||| || || || | ||||| || | ||||| ||
Sbjct 74886 G--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAA 74943
Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421
||||| || ||||| ||||| |||||| || ||| ||||| ||||| || ||
Sbjct 74944 ATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG----CGC 74999
Query 54422 CT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477
|| ||| || ||||| || | ||||| || ||||| || || | || ||| |
Sbjct 75000 CTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACAT 75059
Query 54478 TAGATTGTACGTCTCGATAGC---TGAGTCTAT---ATCCCATTGATGAATTCCTACTGC 54531
|| ||||| || || | | | | || | | |||| ||| || || ||
Sbjct 75060 AAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATACCCACAGC 75113
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591
|||||||||| ||||||||| || | ||||||||||||| || | ||| |||| ||
Sbjct 75114 AACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATA 75173
Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
|| || | || || || ||||| || | ||| ||||| || ||||| | ||
Sbjct 75174 CGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGAT 75233
Query 54652 AACTGAGTTGAGTTTATCCTT 54672
| |||| || | ||||||
Sbjct 75234 GGCAGAGTCCAGCTCATCCTT 75254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593715566304240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |