Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq545 206 3e-48 >seq545 Length=97716 Score = 206 bits (228), Expect = 3e-48 Identities = 641/981 (65%), Gaps = 36/981 (4%) Strand=Plus/Plus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 |||||| || || || || || ||||||| || | ||| | || ||||||||||| Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || ||| | ||||| |||| ||||| ||||| ||||| ||| || || Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 || ||||| ||||| || | ||||||||| |||||| ||| | ||| || | ||| | Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAG 74471 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAAT 53947 | ||||| | | || | | | | ||| ||| ||| | | ||||| Sbjct 74472 CTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAGA 74529 Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAA 54006 |||||||| || || | || | | |||| || || ||||||| || ||||| | Sbjct 74530 GCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGAG 74588 Query 54007 CGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063 || ||| || |||| |||| || || ||||| || || ||| ||||| || || Sbjct 74589 CGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGC 74645 Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 | |||||| || | | | ||| || ||||| ||||| || |||||||| Sbjct 74646 CAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAA 74705 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | | | ||||| |||||| || || | ||| || | | |||| || || ||||| Sbjct 74706 CTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTT 74765 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| || Sbjct 74766 TCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCC 74825 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATT 54301 || || | ||| || || || | || ||| ||| ||||||||||| | ||| Sbjct 74826 GTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATT 74885 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 | ||||| || || || ||||| || || || | ||||| || | ||||| || Sbjct 74886 G--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAA 74943 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 ||||| || ||||| ||||| |||||| || ||| ||||| ||||| || || Sbjct 74944 ATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG----CGC 74999 Query 54422 CT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 || ||| || ||||| || | ||||| || ||||| || || | || ||| | Sbjct 75000 CTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACAT 75059 Query 54478 TAGATTGTACGTCTCGATAGC---TGAGTCTAT---ATCCCATTGATGAATTCCTACTGC 54531 || ||||| || || | | | | || | | |||| ||| || || || Sbjct 75060 AAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATACCCACAGC 75113 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 |||||||||| ||||||||| || | ||||||||||||| || | ||| |||| || Sbjct 75114 AACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATA 75173 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || || | || || || ||||| || | ||| ||||| || ||||| | || Sbjct 75174 CGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGAT 75233 Query 54652 AACTGAGTTGAGTTTATCCTT 54672 | |||| || | |||||| Sbjct 75234 GGCAGAGTCCAGCTCATCCTT 75254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715566304240