Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq734 107 2e-18
seq357 95.1 1e-14
seq160 91.5 1e-13
>seq734
Length=84471
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | | |||| || | ||| |||||||||||||| || ||||| |
Sbjct 21219 CCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGAT 21278
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| || || || |||| || | |||||||||| |||
Sbjct 21279 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21338
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | | | ||||| | ||||
Sbjct 21339 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACC 21398
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | |||||||||||| || |||| || ||||| || ||||||||
Sbjct 21399 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037
||| |||||||| || ||||| ||||| | ||||| || | ||||| || || || ||
Sbjct 21476 AGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCC 21535
Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097
||| |||| || | |||||||||| ||| | || |||||||| |||||| ||
Sbjct 21536 AGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21595
Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
|| | | | | ||||| | ||| ||| | |||||||||||| || |||| ||
Sbjct 21596 GACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGT 21655
Query 21158 TTTGACAAATATTTGCAT 21175
||||| || ||||||||
Sbjct 21656 CTTGACGAAGATTTGCAT 21673
>seq357
Length=115873
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| |||||||| ||||| | |||||| || | ||||||||||| ||||| || | |
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||||||| || | ||| |||||||| ||||| || || | |
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| ||| || || ||| || | |||||| ||||| || || | || ||||| |
Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051
Query 21166 ATATTTGCATTTTGA 21180
| || ||||| ||||
Sbjct 6052 AAATCTGCATCTTGA 6066
>seq160
Length=36261
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||| || ||||| ||||| | ||| || || | ||||| ||||| |||||
Sbjct 3407 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 3466
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | | |||||||||| ||| | ||| |||||||| |||||| ||
Sbjct 3467 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 3526
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | ||| || || | ||| |||| |||||||||||| || || | ||
Sbjct 3527 ACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTC 3586
Query 21159 TTGACAAA 21166
||||| ||
Sbjct 3587 TTGACGAA 3594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422255016071108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |