Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq126 320 2e-82 seq734 122 9e-23 seq357 114 1e-20 seq160 114 1e-20 >seq126 Length=40607 Score = 320 bits (354), Expect = 2e-82 Identities = 518/737 (70%), Gaps = 15/737 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 38658 ATTTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 38599 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||||| | |||||| | |||||| Sbjct 38598 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGAACAAGGACGAGCAGTACTTCATCTC 38540 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| ||||||||| || ||||| |||||||| || || || ||||| Sbjct 38539 CCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCG 38480 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || ||||||||||| || |||||| || Sbjct 38479 CTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 38420 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||| ||| | ||||| |||| || ||| || |||||||| ||| | | || | | Sbjct 38419 GGAAAACATTCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGAGC-CAT 38361 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | || |||| || || || || || || || ||| || |||| Sbjct 38360 CACAGCGCACATACC---TGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGG 38304 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| ||| |||||| ||| || ||| | |||||| | |||||||||| | Sbjct 38303 CCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAG 38244 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| || ||||| ||| |||| || ||||| ||||||| | || || ||||| Sbjct 38243 CTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGC 38184 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || |||||||| || ||||| ||| |||||||| || ||| | || |||| Sbjct 38183 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGG 38124 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 ||||||| ||||||||| || |||||||| || || | || || ||| || Sbjct 38123 GTCTGCACACCGACTTTGCTTGCCTGCTGTTCTCACACCTGAACAACCGCCCCAGCAAGG 38064 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | ||| ||||| |||| ||||| || | |||||| || |||||||| || | Sbjct 38063 ACCTCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGG 38004 Query 117288 CGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | ||| || ||| |||| |||||| | || ||| |||| ||||||||| ||||| Sbjct 38003 CTCTGCCCTGTG-GTCTACTGGGAATGAACGCCGATCTGATGAAGCAATACATTGAGTTT 37945 Query 117347 GTCGCCGACAGGCTGCT 117363 || || ||| | ||||| Sbjct 37944 GTTGCTGACCGCCTGCT 37928 >seq734 Length=84471 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||| ||| |||| || || | || Sbjct 21673 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAAGTAGAGTCATCC 21614 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||| || ||| ||||||| Sbjct 21613 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 21555 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | || || || || || || || | |||||||| ||||||||| Sbjct 21554 GCAGCGTCTCATTTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAA 21495 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || || ||||| Sbjct 21494 CATCCAGAAGGAGTCTACTCTTCACCTTGTTTTGCG 21459 >seq357 Length=115873 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 6064 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6005 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| || |||| ||||| |||||||| || ||||| Sbjct 6004 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGAC 5945 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | |||||||| |||||| Sbjct 5944 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTAC 5885 Query 40867 AACATCCAGAAGG 40879 ||||| ||||||| Sbjct 5884 AACATTCAGAAGG 5872 >seq160 Length=36261 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| | | |||| | Sbjct 3594 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 3535 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||||||||| || | Sbjct 3534 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 3476 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | ||||| || |||||||||||||||||| Sbjct 3475 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 3416 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| |||| || || || || |||| Sbjct 3415 GGAGTCCACCCTCCACCTTGTCCTGCG 3389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213964084880