Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq734 123 3e-23
seq357 96.9 4e-15
seq160 86.0 7e-12
>seq734
Length=84471
Score = 123 bits (136), Expect = 3e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||| ||||| || | || |||||||||||||||||| || | || || || |
Sbjct 21230 ACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCC 21289
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| |||||||| ||||| ||||||||||| | || | | ||||||
Sbjct 21290 ATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTT 21349
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| || |||| ||| | | | || || || ||||| |||| || |
Sbjct 21350 GTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAA 21408
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| || || ||||| ||||| || |||||||||||
Sbjct 21409 TGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || || ||||| ||||| ||
Sbjct 21482 CTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAA 21541
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 21542 AATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 21600
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| || || || |||| || ||||| || || ||||| ||||| |
Sbjct 21601 TGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGA 21660
Query 43171 CAAAGATTTGCAT 43183
| |||||||||||
Sbjct 21661 CGAAGATTTGCAT 21673
>seq357
Length=115873
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| ||||| ||||| |||| ||| || || | || || |||||||| |||||||| |
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112
| || ||||||||||| | || | || |||||||||| ||| | || | |||| |
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 5990
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | ||||| || || || |||| || || || || ||||| || ||||| ||
Sbjct 5991 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 6050
Query 43173 AAGATTTGCATTTTTAC 43189
|| || ||||| || ||
Sbjct 6051 AAAATCTGCATCTTGAC 6067
>seq160
Length=36261
Score = 86.0 bits (94), Expect = 7e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | |||||| || | || || |||||||| ||||| ||
Sbjct 3412 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 3471
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 3472 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3530
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || || | || ||||| || ||||| || ||||| |
Sbjct 3531 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 3590
Query 43171 CAAA 43174
| ||
Sbjct 3591 CGAA 3594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571811788903640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |