Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq545 120 7e-22 >seq545 Length=97716 Score = 120 bits (132), Expect = 7e-22 Identities = 228/329 (69%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| ||||| ||| |||||||| |||||| |||| |||||| Sbjct 75209 TACCAGTACTTTGGCTTCAAGACGCTCGAGCGTTCGTATCTGCTCAAACTTGACGGCAAG 75150 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||||| ||||| ||||||||| | ||||| || ||||| || ||| || |||| Sbjct 75149 ATCGTTGAACGTCCCCAGCACATGATAATGCGTGTTGCTGTGGGTATT---TGGGGTGAC 75093 Query 248938 A---TAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT-GAACGCTGGATGACACATGC 248993 | | || ||||||| || || |||| | ||| | | | | | | || || || Sbjct 75092 AAAGTCGAACGCGTGCTTGAAACCTACAACCTTATGTCTAGCAAG-TTCTTCACTCACGC 75034 Query 248994 CACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCT 249053 |||| ||||||||||| |||||||| | | ||| || || || || || | Sbjct 75033 ATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCATGTTTCCTAGT 74974 Query 249054 TGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGA 249112 || |||| |||| ||| | |||| |||||||| || || || || || | || | || Sbjct 74973 TGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACTTGC-GCCATGA 74915 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTC 249141 |||| || | || || || ||||||||| Sbjct 74914 TTTCCAAGATGGCCGGTGGTATCGGTCTC 74886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073755215045184