Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq734 114 1e-20 seq357 107 2e-18 seq160 100 2e-16 >seq734 Length=84471 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || |||||||| || || |||||| ||||| ||||||||| Sbjct 21218 GCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGA 21277 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || ||||| ||||| || | ||||| ||||| || || Sbjct 21278 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21337 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||||| || || ||| || | | | | ||| | |||||| Sbjct 21338 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21397 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | |||||| ||||| || || |||||||| || ||||||||||| Sbjct 21398 CTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 >seq357 Length=115873 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||||||||||||||| ||| ||| | || ||||| || || || ||||| | Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| ||||| | |||||||||||| ||| || ||| || Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||| ||| ||||| | |||||||||||| ||||| || ||||| || | Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051 Query 45327 AGATTTGCATGTTG 45340 | || ||||| ||| Sbjct 6052 AAATCTGCATCTTG 6065 >seq160 Length=36261 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| ||| ||| | || || || || Sbjct 3400 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTG 3459 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||| ||||| ||||| || || | |||||||||||| || || Sbjct 3460 CTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 3519 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | ||| ||||||| |||||| ||||| ||||| Sbjct 3520 GGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGT 3579 Query 45313 CAGAGTCTTCACAAA 45327 ||| ||||| || || Sbjct 3580 CAGGGTCTTGACGAA 3594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071285422073