Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq734 114 1e-20
seq357 107 2e-18
seq160 100 2e-16
>seq734
Length=84471
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | || | || |||||||| || || |||||| ||||| |||||||||
Sbjct 21218 GCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGA 21277
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || || || || ||||| ||||| || | ||||| ||||| || ||
Sbjct 21278 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21337
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||||||||||||| || || ||| || | | | | ||| | ||||||
Sbjct 21338 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21397
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | |||||| ||||| || || |||||||| || |||||||||||
Sbjct 21398 CTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
>seq357
Length=115873
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||||||||||||||| ||| ||| | || ||||| || || || ||||| |
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||| ||||| ||||| ||||| | |||||||||||| ||| || ||| ||
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | ||||| ||| ||||| | |||||||||||| ||||| || ||||| || |
Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051
Query 45327 AGATTTGCATGTTG 45340
| || ||||| |||
Sbjct 6052 AAATCTGCATCTTG 6065
>seq160
Length=36261
Score = 100 bits (110), Expect = 2e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| ||| ||| | || || || ||
Sbjct 3400 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTG 3459
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || ||||| ||||| ||||| || || | |||||||||||| || ||
Sbjct 3460 CTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 3519
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | ||||| | ||| ||||||| |||||| ||||| |||||
Sbjct 3520 GGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGT 3579
Query 45313 CAGAGTCTTCACAAA 45327
||| ||||| || ||
Sbjct 3580 CAGGGTCTTGACGAA 3594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395071285422073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |