Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq545 250 2e-61
seq357 105 6e-18
seq734 84.2 2e-11
>seq545
Length=97716
Score = 250 bits (276), Expect = 2e-61
Identities = 637/961 (66%), Gaps = 14/961 (1%)
Strand=Plus/Plus
Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079
||||| || || || ||||| || || ||||| || || ||||| | ||| ||
Sbjct 74286 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTC 74345
Query 23080 GGTACATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136
|| ||||| || ||| | || || || | ||| |||| ||||| || || ||
Sbjct 74346 AGTGCATAGGTTAGAGCTGCGA---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 74402
Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
||| || ||||| |||||| | || |||| || || ||| | || | || ||
Sbjct 74403 GCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGC 74462
Query 23197 TCGCCACATAGTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTT 23253
||||| |||| || | ||| | | || || | ||| |||| || |||||
Sbjct 74463 ATACCACAGCTTCTGGGCCTTGACAACCATGCGACCGCGAC--CCTCCTTC-TCATACTT 74519
Query 23254 TTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG 23313
|| |||| || ||||| || | || || ||||| |||| ||| || ||| | ||
Sbjct 74520 TTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGG 74579
Query 23314 ACACATGAGACTCCACAT-TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372
|||||||| |||| | | || || ||||| || |||| || || || ||||
Sbjct 74580 GCACATGAGCGTCCAGTCCTCATTC-TTCTCAACACGCTTCATGAACAGGTCACAGATCC 74638
Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432
| || || | || || || || || || || || || || ||| |||||| | |
Sbjct 74639 AGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGT 74698
Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492
| | || || || || || |||||||| ||||||||||||| ||||| || || ||||
Sbjct 74699 CGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTC 74758
Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552
||| || || ||||| || || |||||||| ||||||||| | || | ||||| || |
Sbjct 74759 GCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAA 74818
Query 23553 CGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612
| | ||||| || | ||| ||| || | || || | || |||| ||
Sbjct 74819 CAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGT 74878
Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672
|||| | || ||| || || ||| || || || ||||| ||||| || || || |
Sbjct 74879 GAACATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTAT 74938
Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732
|||| ||||| ||||| ||||| ||||| | | || | |||||| ||||||| ||||
Sbjct 74939 CGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCG 74998
Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792
| | ||| ||| |||| ||| || || || ||||| || ||| | | ||||
Sbjct 74999 CCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACA 75058
Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852
| || ||||| || || | || || | | || || ||||| | || || |
Sbjct 75059 TAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACAC 75118
Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912
|||| ||||||| || || | || || | ||||| || ||||| |||||| ||||
Sbjct 75119 GCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACGAAC 75178
Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972
| | | ||| || || ||||| || | ||||| ||||||||||||| ||| ||||| |
Sbjct 75179 GCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAG 75238
Query 23973 A 23973
|
Sbjct 75239 A 75239
>seq357
Length=115873
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| |
Sbjct 6064 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6005
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 6004 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGAC 5945
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || ||||||||||| ||| |||| ||
Sbjct 5944 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 5907
>seq734
Length=84471
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||||| || || || || || ||| |||| || || | ||
Sbjct 21445 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCG 21386
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | ||||| | || ||||||||| || | || || ||||||
Sbjct 21385 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21326
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||| | || || || | ||| || ||
Sbjct 21325 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTATCCGACTACAAT 21266
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|||||||| || || |||||||| ||||
Sbjct 21265 ATTCAAAAGGAGTCTACTCTTCACTTGGT 21237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445761869898960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |