Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq545 250 2e-61 seq357 105 6e-18 seq734 84.2 2e-11 >seq545 Length=97716 Score = 250 bits (276), Expect = 2e-61 Identities = 637/961 (66%), Gaps = 14/961 (1%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||||| || || || ||||| || || ||||| || || ||||| | ||| || Sbjct 74286 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTC 74345 Query 23080 GGTACATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 || ||||| || ||| | || || || | ||| |||| ||||| || || || Sbjct 74346 AGTGCATAGGTTAGAGCTGCGA---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 74402 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||| || ||||| |||||| | || |||| || || ||| | || | || || Sbjct 74403 GCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGC 74462 Query 23197 TCGCCACATAGTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTT 23253 ||||| |||| || | ||| | | || || | ||| |||| || ||||| Sbjct 74463 ATACCACAGCTTCTGGGCCTTGACAACCATGCGACCGCGAC--CCTCCTTC-TCATACTT 74519 Query 23254 TTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG 23313 || |||| || ||||| || | || || ||||| |||| ||| || ||| | || Sbjct 74520 TTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGG 74579 Query 23314 ACACATGAGACTCCACAT-TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372 |||||||| |||| | | || || ||||| || |||| || || || |||| Sbjct 74580 GCACATGAGCGTCCAGTCCTCATTC-TTCTCAACACGCTTCATGAACAGGTCACAGATCC 74638 Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432 | || || | || || || || || || || || || || ||| |||||| | | Sbjct 74639 AGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGT 74698 Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492 | | || || || || || |||||||| ||||||||||||| ||||| || || |||| Sbjct 74699 CGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTC 74758 Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552 ||| || || ||||| || || |||||||| ||||||||| | || | ||||| || | Sbjct 74759 GCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAA 74818 Query 23553 CGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612 | | ||||| || | ||| ||| || | || || | || |||| || Sbjct 74819 CAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGT 74878 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 |||| | || ||| || || ||| || || || ||||| ||||| || || || | Sbjct 74879 GAACATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTAT 74938 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 |||| ||||| ||||| ||||| ||||| | | || | |||||| ||||||| |||| Sbjct 74939 CGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCG 74998 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 | | ||| ||| |||| ||| || || || ||||| || ||| | | |||| Sbjct 74999 CCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACA 75058 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 | || ||||| || || | || || | | || || ||||| | || || | Sbjct 75059 TAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACAC 75118 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 |||| ||||||| || || | || || | ||||| || ||||| |||||| |||| Sbjct 75119 GCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACGAAC 75178 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 | | | ||| || || ||||| || | ||||| ||||||||||||| ||| ||||| | Sbjct 75179 GCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAG 75238 Query 23973 A 23973 | Sbjct 75239 A 75239 >seq357 Length=115873 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| | Sbjct 6064 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6005 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 6004 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGAC 5945 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 5944 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 5907 >seq734 Length=84471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || || || ||| |||| || || | || Sbjct 21445 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCG 21386 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| || | || || |||||| Sbjct 21385 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21326 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || || | ||| || || Sbjct 21325 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTATCCGACTACAAT 21266 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || || |||||||| |||| Sbjct 21265 ATTCAAAAGGAGTCTACTCTTCACTTGGT 21237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761869898960