Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq545 192 7e-44 >seq545 Length=97716 Score = 192 bits (212), Expect = 7e-44 Identities = 767/1186 (65%), Gaps = 36/1186 (3%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 |||||| || || ||||| || ||||||| || | ||| | || ||||||||||| Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || ||| | || || |||| ||||| ||||| ||||| ||| || || Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 || ||||| ||||| || | ||||||||| |||| | ||| | ||| || | ||| | Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA- 74470 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGT--ATACAA 63184 | || | ||||| | | || | | | | ||| ||| ||| | ||||| Sbjct 74471 GCTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAG 74528 Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCA 63243 || ||||| || || | || | | |||| | || ||||||| || ||||| | Sbjct 74529 AGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGA 74587 Query 63244 ACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 || ||| || |||| |||| || || ||||| || || ||| ||||| || | Sbjct 74588 GCGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGG 74644 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | | |||||| || | | | ||| || ||||| ||||| || ||||||| Sbjct 74645 CCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGA 74704 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 || | | | ||||| |||||| || || | ||| || || | |||| || || |||| Sbjct 74705 ACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGT 74764 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 |||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| | Sbjct 74765 TTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGC 74824 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA--TTACTAAT 63538 |||| || |||| || || || | || ||| ||| ||||||||||| | || Sbjct 74825 CGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACAT 74884 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 || ||||| || || || ||||| || || || | ||||| || | || || || Sbjct 74885 TG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTA 74942 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 |||||||| || || ||||| |||||| || ||| ||||| ||||| || | Sbjct 74943 AATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTG 75002 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||| || ||||| || | ||||| || ||||| || || | || ||| | || Sbjct 75003 GGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAG 75062 Query 63719 ATTGTACGTCTCAATAGC---TGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGAC 63772 ||||| || |||| | | | || | | |||| ||| || || || || Sbjct 75063 GTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATACCCACAGCAAC 75116 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||||| ||||||||| || | |||||| || ||| || | ||| | || || || Sbjct 75117 ACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACGA 75176 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 || | || || || ||||| || | ||| ||||| || ||||| | || | Sbjct 75177 ACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGC 75236 Query 63893 CGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATACTTGAAATAATCG 63951 || | |||| |||||| | ||| | | ||| || | || || || | Sbjct 75237 AGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTTTGGAGATCATAG 75295 Query 63952 GAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA- 64010 |||| || | || ||| |||||||| | | | | || || ||| | || | Sbjct 75296 GAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACACCAC-TGACGAC 75354 Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070 || | || || |||| |||||| ||||| || | || || | ||| || || |||||| Sbjct 75355 CATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAGCCAGGATGGCA 75414 Query 64071 TAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 ||||| ||||| ||| | || || ||| || ||||||| ||| Sbjct 75415 TAATCGGGATG-GGTGACGGTCATGTAGGCGGCAGTTTCGGCAGCC 75459 Score = 95.1 bits (104), Expect = 2e-14 Identities = 211/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||||| |||||||| ||||| || | || | | ||||||||| |||||||| Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 ||||| || || || || |||| ||| ||| ||||| || || | ||| | Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 |||||| || || || || | ||| || ||| || ||||| || || | ||| ||| Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||||| || | || || | ||| ||||||| || || || | |||||| Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608 Query 62274 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 || |||| | | | | ||||||||||| || || | ||||| | |||||| Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668 Query 62331 ATCTCATCATTCCATA 62346 || | ||| ||||| Sbjct 73669 ATATTGTCAGACCATA 73684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811199478640