Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq545 192 7e-44
>seq545
Length=97716
Score = 192 bits (212), Expect = 7e-44
Identities = 767/1186 (65%), Gaps = 36/1186 (3%)
Strand=Plus/Plus
Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007
|||||| || || ||||| || ||||||| || | ||| | || |||||||||||
Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
|| ||| | || || |||| ||||| ||||| ||||| ||| || ||
Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
|| ||||| ||||| || | ||||||||| |||| | ||| | ||| || | ||| |
Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA- 74470
Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGT--ATACAA 63184
| || | ||||| | | || | | | | ||| ||| ||| | |||||
Sbjct 74471 GCTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAG 74528
Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCA 63243
|| ||||| || || | || | | |||| | || ||||||| || ||||| |
Sbjct 74529 AGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGA 74587
Query 63244 ACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300
|| ||| || |||| |||| || || ||||| || || ||| ||||| || |
Sbjct 74588 GCGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGG 74644
Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360
| | |||||| || | | | ||| || ||||| ||||| || |||||||
Sbjct 74645 CCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGA 74704
Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420
|| | | | ||||| |||||| || || | ||| || || | |||| || || ||||
Sbjct 74705 ACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGT 74764
Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480
|||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| |
Sbjct 74765 TTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGC 74824
Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA--TTACTAAT 63538
|||| || |||| || || || | || ||| ||| ||||||||||| | ||
Sbjct 74825 CGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACAT 74884
Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598
|| ||||| || || || ||||| || || || | ||||| || | || || ||
Sbjct 74885 TG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTA 74942
Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658
|||||||| || || ||||| |||||| || ||| ||||| ||||| || |
Sbjct 74943 AATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTG 75002
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718
| ||| || ||||| || | ||||| || ||||| || || | || ||| | ||
Sbjct 75003 GGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAG 75062
Query 63719 ATTGTACGTCTCAATAGC---TGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGAC 63772
||||| || |||| | | | || | | |||| ||| || || || ||
Sbjct 75063 GTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATACCCACAGCAAC 75116
Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832
|||||||| ||||||||| || | |||||| || ||| || | ||| | || || ||
Sbjct 75117 ACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACGA 75176
Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892
|| | || || || ||||| || | ||| ||||| || ||||| | || |
Sbjct 75177 ACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGC 75236
Query 63893 CGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATACTTGAAATAATCG 63951
|| | |||| |||||| | ||| | | ||| || | || || || |
Sbjct 75237 AGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTTTGGAGATCATAG 75295
Query 63952 GAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA- 64010
|||| || | || ||| |||||||| | | | | || || ||| | || |
Sbjct 75296 GAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACACCAC-TGACGAC 75354
Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070
|| | || || |||| |||||| ||||| || | || || | ||| || || ||||||
Sbjct 75355 CATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAGCCAGGATGGCA 75414
Query 64071 TAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115
||||| ||||| ||| | || || ||| || ||||||| |||
Sbjct 75415 TAATCGGGATG-GGTGACGGTCATGTAGGCGGCAGTTTCGGCAGCC 75459
Score = 95.1 bits (104), Expect = 2e-14
Identities = 211/316 (67%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093
|||| ||||| |||||||| ||||| || | || | | ||||||||| ||||||||
Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428
Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153
||||| || || || || |||| ||| ||| ||||| || || | ||| |
Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488
Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213
|||||| || || || || | ||| || ||| || ||||| || || | ||| |||
Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548
Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273
||||||| || | || || | ||| ||||||| || || || | ||||||
Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608
Query 62274 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330
|| |||| | | | | ||||||||||| || || | ||||| | ||||||
Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668
Query 62331 ATCTCATCATTCCATA 62346
|| | ||| |||||
Sbjct 73669 ATATTGTCAGACCATA 73684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629811199478640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |