Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq545 208 1e-48 >seq545 Length=97716 Score = 208 bits (230), Expect = 1e-48 Identities = 772/1188 (65%), Gaps = 30/1188 (3%) Strand=Plus/Plus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||| |||||| || || || || || ||||||| || | ||| | || || ||| Sbjct 74287 GCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCA 74346 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||| |||||| | |||||| |||| ||||| ||||| ||||| ||| || Sbjct 74347 GTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAG 74406 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 || || ||||| ||||| || | ||||||||| |||| | ||| | ||| || | | Sbjct 74407 TGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATAC 74466 Query 79795 CAGACGACTC-GAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCTTTCGTATTGTGTAT 79852 || | | || | ||||| | | | || | | | ||| ||| || | | Sbjct 74467 CACA-GCTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCATACTTTTC 74522 Query 79853 ATA-ATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 ||| | | || ||||| || || | || | || || || ||||| | || || Sbjct 74523 ATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCA 74582 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 ||| | || ||| || ||| | || || || ||||| || || ||| ||||| || Sbjct 74583 CATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAG 74642 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 || | |||||| || | | | || || ||||| ||||| || ||||| Sbjct 74643 GGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAG 74702 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 |||| | | | ||||| |||||| || || | ||| || || | |||| ||||| || Sbjct 74703 GAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTT 74762 Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 80150 |||||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| Sbjct 74763 GTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAAT 74822 Query 80151 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTA 80208 || || || ||||| || || || | || ||| ||| ||||||||||| | Sbjct 74823 GCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAAC 74882 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 |||| ||||| || || || ||||| || || || | ||||| || | ||||| Sbjct 74883 ATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCG 74940 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 || ||||| || || || ||||| |||||| || ||| ||||| ||||| || Sbjct 74941 TAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG---- 74996 Query 80329 CGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 80384 || || ||| || ||||| || | ||||| || ||||| || || | || ||| Sbjct 74997 CGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 75056 Query 80385 CAGTAGATTGTACGTCTCAATAGCTGATTCTA-TATCCCATTGATGAATTCCTACCGCGA 80443 || || ||||| || |||| | ||| | | | || ||| || || || | Sbjct 75057 CATAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCA-CCCCAAATACCCACAGCAA 75115 Query 80444 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAG 80503 ||||||||| ||||||||| || | ||||||||||||| | | ||| | || || | Sbjct 75116 CACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACG 75175 Query 80504 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 80563 | || | || || || ||||| || | ||| ||||| || ||||| | || Sbjct 75176 AACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGG 75235 Query 80564 CCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT--GAAATAAT 80621 | |||| || | |||||| | ||| | || ||| || ||| || || || Sbjct 75236 CAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGATCAT 75293 Query 80622 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 80681 ||||| || | || ||| |||||||| | | | | || || ||| | || Sbjct 75294 AGGAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACACCAC-TGACG 75352 Query 80682 A-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 | || | || || |||| |||||| ||||| || || || || | ||| || | |||| Sbjct 75353 ACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAGCCAGGATGG 75412 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 80787 ||||||| ||||| ||| | || || ||| || ||||||| ||| Sbjct 75413 CATAATCGGGATG-GGTGACGGTCATGTAGGCGGCAGTTTCGGCAGCC 75459 Score = 95.1 bits (104), Expect = 2e-14 Identities = 211/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||||| |||||||| ||||| || | || | | ||||||||| |||||||| Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 ||||| || || || || |||| ||| || ||||| || || | ||| | Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 |||||| || || || || | ||| || ||| || ||||| || || | ||| ||| Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||||| || | || || | ||| ||||||| || || || | |||||| Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608 Query 78946 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || |||| | | | | ||||||||||| || || || ||||| | |||||| Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668 Query 79003 ATCTCTTCATTCCATA 79018 || | ||| ||||| Sbjct 73669 ATATTGTCAGACCATA 73684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261500593320