Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq545 208 1e-48
>seq545
Length=97716
Score = 208 bits (230), Expect = 1e-48
Identities = 772/1188 (65%), Gaps = 30/1188 (3%)
Strand=Plus/Plus
Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674
|||| |||||| || || || || || ||||||| || | ||| | || || |||
Sbjct 74287 GCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCA 74346
Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734
||||| |||||| | |||||| |||| ||||| ||||| ||||| ||| ||
Sbjct 74347 GTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAG 74406
Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794
|| || ||||| ||||| || | ||||||||| |||| | ||| | ||| || | |
Sbjct 74407 TGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATAC 74466
Query 79795 CAGACGACTC-GAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCTTTCGTATTGTGTAT 79852
|| | | || | ||||| | | | || | | | ||| ||| || | |
Sbjct 74467 CACA-GCTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCATACTTTTC 74522
Query 79853 ATA-ATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910
||| | | || ||||| || || | || | || || || ||||| | || ||
Sbjct 74523 ATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCA 74582
Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970
||| | || ||| || ||| | || || || ||||| || || ||| ||||| ||
Sbjct 74583 CATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAG 74642
Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030
|| | |||||| || | | | || || ||||| ||||| || |||||
Sbjct 74643 GGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAG 74702
Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090
|||| | | | ||||| |||||| || || | ||| || || | |||| ||||| ||
Sbjct 74703 GAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTT 74762
Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 80150
|||||| ||||| || | || | |||||||| || |||| | || ||| |||| |||
Sbjct 74763 GTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAAT 74822
Query 80151 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTA 80208
|| || || ||||| || || || | || ||| ||| ||||||||||| |
Sbjct 74823 GCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAAC 74882
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|||| ||||| || || || ||||| || || || | ||||| || | |||||
Sbjct 74883 ATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCG 74940
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
|| ||||| || || || ||||| |||||| || ||| ||||| ||||| ||
Sbjct 74941 TAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG---- 74996
Query 80329 CGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 80384
|| || ||| || ||||| || | ||||| || ||||| || || | || |||
Sbjct 74997 CGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 75056
Query 80385 CAGTAGATTGTACGTCTCAATAGCTGATTCTA-TATCCCATTGATGAATTCCTACCGCGA 80443
|| || ||||| || |||| | ||| | | | || ||| || || || |
Sbjct 75057 CATAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCA-CCCCAAATACCCACAGCAA 75115
Query 80444 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAG 80503
||||||||| ||||||||| || | ||||||||||||| | | ||| | || || |
Sbjct 75116 CACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACG 75175
Query 80504 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 80563
| || | || || || ||||| || | ||| ||||| || ||||| | ||
Sbjct 75176 AACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGG 75235
Query 80564 CCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT--GAAATAAT 80621
| |||| || | |||||| | ||| | || ||| || ||| || || ||
Sbjct 75236 CAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGATCAT 75293
Query 80622 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 80681
||||| || | || ||| |||||||| | | | | || || ||| | ||
Sbjct 75294 AGGAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACACCAC-TGACG 75352
Query 80682 A-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
| || | || || |||| |||||| ||||| || || || || | ||| || | ||||
Sbjct 75353 ACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAGCCAGGATGG 75412
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 80787
||||||| ||||| ||| | || || ||| || ||||||| |||
Sbjct 75413 CATAATCGGGATG-GGTGACGGTCATGTAGGCGGCAGTTTCGGCAGCC 75459
Score = 95.1 bits (104), Expect = 2e-14
Identities = 211/316 (67%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765
|||| ||||| |||||||| ||||| || | || | | ||||||||| ||||||||
Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428
Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825
||||| || || || || |||| ||| || ||||| || || | ||| |
Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488
Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885
|||||| || || || || | ||| || ||| || ||||| || || | ||| |||
Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548
Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945
||||||| || | || || | ||| ||||||| || || || | ||||||
Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608
Query 78946 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002
|| |||| | | | | ||||||||||| || || || ||||| | ||||||
Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668
Query 79003 ATCTCTTCATTCCATA 79018
|| | ||| |||||
Sbjct 73669 ATATTGTCAGACCATA 73684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718261500593320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |