Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq545 188 1e-42
>seq545
Length=97716
Score = 188 bits (208), Expect = 1e-42
Identities = 748/1157 (65%), Gaps = 34/1157 (3%)
Strand=Plus/Plus
Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756
||| | |||||| || || || || || ||||||| || | ||| | ||||| ||
Sbjct 74286 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTC 74345
Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816
|||||| || ||| | ||||| |||| ||||| ||||| ||||| ||| ||
Sbjct 74346 AGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 74405
Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876
|| || ||||| || || || | ||||||||| |||| | ||| | ||| || |
Sbjct 74406 GTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATA 74465
Query 71877 CCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTCGTATTGTGTA 71934
||| | | || | ||||| | | | || | | | ||| ||| || | |
Sbjct 74466 CCACA-GCTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCATACTTTT 74521
Query 71935 TATA-ATCGT-TCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGA 71991
||| | | || ||||| || || | ||| | | | || || || |||||||| ||
Sbjct 74522 CATACAGAGCCTCAAACTCTTCGCCATA-GCAGTCTGCCAAGCCTGGGCATTCATTGGGG 74580
Query 71992 CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAA 72051
||||| | | ||| || ||| | | || || ||||| || || ||| |||||
Sbjct 74581 CACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAG 74640
Query 72052 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 72111
|| || | |||||| || | | | || || ||||| ||||| || |||
Sbjct 74641 AGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCG 74700
Query 72112 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGT 72171
|||||| | | | ||||| |||||| || || | ||| || || | |||| || ||
Sbjct 74701 AGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGC 74760
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|||||||| ||||| || | || | |||||||| || |||| | || ||| |||| |
Sbjct 74761 TTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACA 74820
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGC 72289
|| || || || | ||| || || || | || ||| ||| ||||||||||| ||
Sbjct 74821 ATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGA 74880
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
|||| ||||| || || || ||||| || || || | ||||| || | ||||
Sbjct 74881 ACATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTAT 74938
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
| || ||||| || ||||| ||||| |||||| || ||| ||||| ||||| ||
Sbjct 74939 CGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG-- 74996
Query 72410 GACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465
|| || ||| || ||||| || | ||||| || ||||| || || | || |
Sbjct 74997 --CGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTA 75054
Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATT---CTATATCCCATTGATGTATTCCTACC 72522
|||| || ||||| || |||| | || || | || | | || || ||
Sbjct 75055 GACATAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCAA---ATACCCACA 75111
Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582
|| |||||||||| ||| ||||| || | ||||||||||||| | | ||| | ||
Sbjct 75112 GCAACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGA 75171
Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642
|| || || | || || || ||||| || | ||| ||||| || ||||| |
Sbjct 75172 TACGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACG 75231
Query 72643 ATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAA 72700
|| | || | || | |||||| | ||| | | ||| || ||| || |
Sbjct 75232 ATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGA 75289
Query 72701 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 72760
| || ||||| || | || ||| |||||||| | | | | || || ||| |
Sbjct 75290 TCATAGGAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACACCAC-T 75348
Query 72761 CACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 72819
|| | || | || || |||| |||||| ||||| || || || || | ||| || ||
Sbjct 75349 GACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAGCCAGG 75408
Query 72820 ATGGCATAATCTGGATG 72836
||||||||||| |||||
Sbjct 75409 ATGGCATAATCGGGATG 75425
Score = 95.1 bits (104), Expect = 2e-14
Identities = 211/316 (67%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||||| || || || ||||| | | || || | ||||||||| ||||||||
Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || || || || |||| ||| ||| ||||| || || | ||| | |
Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
||||| |||||||| || | ||||| ||| || ||||| || || | ||| |||
Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
||||||| || | || || | ||| ||||||| || || || | ||||||
Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608
Query 71029 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085
|| |||| | | | | ||||||||||| || || |||||||| | ||| ||
Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668
Query 71086 ATCTCTTCATTCCATA 71101
|| | ||| |||||
Sbjct 73669 ATATTGTCAGACCATA 73684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671132379547880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |