Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq545 188 1e-42 >seq545 Length=97716 Score = 188 bits (208), Expect = 1e-42 Identities = 748/1157 (65%), Gaps = 34/1157 (3%) Strand=Plus/Plus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||| | |||||| || || || || || ||||||| || | ||| | ||||| || Sbjct 74286 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTC 74345 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 |||||| || ||| | ||||| |||| ||||| ||||| ||||| ||| || Sbjct 74346 AGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 74405 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 || || ||||| || || || | ||||||||| |||| | ||| | ||| || | Sbjct 74406 GTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATA 74465 Query 71877 CCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTCGTATTGTGTA 71934 ||| | | || | ||||| | | | || | | | ||| ||| || | | Sbjct 74466 CCACA-GCTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCATACTTTT 74521 Query 71935 TATA-ATCGT-TCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGA 71991 ||| | | || ||||| || || | ||| | | | || || || |||||||| || Sbjct 74522 CATACAGAGCCTCAAACTCTTCGCCATA-GCAGTCTGCCAAGCCTGGGCATTCATTGGGG 74580 Query 71992 CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAA 72051 ||||| | | ||| || ||| | | || || ||||| || || ||| ||||| Sbjct 74581 CACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAG 74640 Query 72052 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 72111 || || | |||||| || | | | || || ||||| ||||| || ||| Sbjct 74641 AGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCG 74700 Query 72112 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGT 72171 |||||| | | | ||||| |||||| || || | ||| || || | |||| || || Sbjct 74701 AGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGC 74760 Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 |||||||| ||||| || | || | |||||||| || |||| | || ||| |||| | Sbjct 74761 TTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACA 74820 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGC 72289 || || || || | ||| || || || | || ||| ||| ||||||||||| || Sbjct 74821 ATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGA 74880 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 |||| ||||| || || || ||||| || || || | ||||| || | |||| Sbjct 74881 ACATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTAT 74938 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 | || ||||| || ||||| ||||| |||||| || ||| ||||| ||||| || Sbjct 74939 CGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG-- 74996 Query 72410 GACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || || ||| || ||||| || | ||||| || ||||| || || | || | Sbjct 74997 --CGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTA 75054 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATT---CTATATCCCATTGATGTATTCCTACC 72522 |||| || ||||| || |||| | || || | || | | || || || Sbjct 75055 GACATAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCAA---ATACCCACA 75111 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 || |||||||||| ||| ||||| || | ||||||||||||| | | ||| | || Sbjct 75112 GCAACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGA 75171 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || || | || || || ||||| || | ||| ||||| || ||||| | Sbjct 75172 TACGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACG 75231 Query 72643 ATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAA 72700 || | || | || | |||||| | ||| | | ||| || ||| || | Sbjct 75232 ATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGA 75289 Query 72701 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 72760 | || ||||| || | || ||| |||||||| | | | | || || ||| | Sbjct 75290 TCATAGGAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACACCAC-T 75348 Query 72761 CACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 72819 || | || | || || |||| |||||| ||||| || || || || | ||| || || Sbjct 75349 GACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAGCCAGG 75408 Query 72820 ATGGCATAATCTGGATG 72836 ||||||||||| ||||| Sbjct 75409 ATGGCATAATCGGGATG 75425 Score = 95.1 bits (104), Expect = 2e-14 Identities = 211/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||||| || || || ||||| | | || || | ||||||||| |||||||| Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || || || || |||| ||| ||| ||||| || || | ||| | | Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 ||||| |||||||| || | ||||| ||| || ||||| || || | ||| ||| Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||||| || | || || | ||| ||||||| || || || | |||||| Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608 Query 71029 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || |||| | | | | ||||||||||| || || |||||||| | ||| || Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668 Query 71086 ATCTCTTCATTCCATA 71101 || | ||| ||||| Sbjct 73669 ATATTGTCAGACCATA 73684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132379547880