Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq379 159 5e-35 seq612 100 4e-17 >seq379 Length=111674 Score = 159 bits (176), Expect = 5e-35 Identities = 200/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| ||| |||||| || ||||| || || ||||| ||||| || | Sbjct 31204 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACAAAGCCTGCCA 31146 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| || ||||||||||| ||||||||| |||| | || | || || || | Sbjct 31145 TTCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATTTACGAGGAAA 31086 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | ||| ||||| | || |||| ||||||| || || || | Sbjct 31085 CCCGTGGTGTTCTCAAGTCTTTCCTTGAAGGTGTCATCCGTGATGCTGTCACATACACTG 31026 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || || ||||||||||| || | ||| |||||||||| | || | |||| Sbjct 31025 AGCATGCCAAGCGCAAGACTGTCACTTCTCTTGATGTCGTCTATGCTCTCAAGAGACAAG 30966 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || ||||| || ||||| || Sbjct 30965 GCCGCACTCTGTACGGTTTCGGCGGTTAAACT 30934 >seq612 Length=91842 Score = 100 bits (110), Expect = 4e-17 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 21731 CGCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCCA 21673 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | |||||||| |||||||||||||| ||||||||| | |||| Sbjct 21672 TTCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 21631 Score = 98.7 bits (108), Expect = 2e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| ||| | ||| | ||| |||||| || || |||| ||| | Sbjct 21556 TGATCTACGAAGAGACTCGCGGTGTCCTCAAGTCCTTCCTTGAGGGTGTCATCCGTGACG 21497 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| ||||||||||| || || ||||| |||||||| | ||| ||||||||| Sbjct 21496 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGATGTCGTCTATG 21437 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||||| | || ||||| || ||||| Sbjct 21436 CTCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAA 21393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074456668409