Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq379 159 5e-35
seq612 100 4e-17
>seq379
Length=111674
Score = 159 bits (176), Expect = 5e-35
Identities = 200/272 (74%), Gaps = 2/272 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||||||||||| ||| |||||| || ||||| || || ||||| ||||| || |
Sbjct 31204 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACAAAGCCTGCCA 31146
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| |||||||| || ||||||||||| ||||||||| |||| | || | || || || |
Sbjct 31145 TTCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATTTACGAGGAAA 31086
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| |||| | ||| ||||| | || |||| ||||||| || || || |
Sbjct 31085 CCCGTGGTGTTCTCAAGTCTTTCCTTGAAGGTGTCATCCGTGATGCTGTCACATACACTG 31026
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
|||| || || || ||||||||||| || | ||| |||||||||| | || | ||||
Sbjct 31025 AGCATGCCAAGCGCAAGACTGTCACTTCTCTTGATGTCGTCTATGCTCTCAAGAGACAAG 30966
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|||| | | || ||||| || ||||| ||
Sbjct 30965 GCCGCACTCTGTACGGTTTCGGCGGTTAAACT 30934
>seq612
Length=91842
Score = 100 bits (110), Expect = 4e-17
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| ||| |||||| || ||||| || || ||||||||||| || |
Sbjct 21731 CGCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCCA 21673
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
| |||||||| |||||||||||||| ||||||||| | ||||
Sbjct 21672 TTCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 21631
Score = 98.7 bits (108), Expect = 2e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| ||| | ||| | ||| |||||| || || |||| ||| |
Sbjct 21556 TGATCTACGAAGAGACTCGCGGTGTCCTCAAGTCCTTCCTTGAGGGTGTCATCCGTGACG 21497
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| ||||||||||| || || ||||| |||||||| | ||| |||||||||
Sbjct 21496 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGATGTCGTCTATG 21437
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||||| | || ||||| || |||||
Sbjct 21436 CTCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAA 21393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074456668409
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |