Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq545 203 4e-47
>seq545
Length=97716
Score = 203 bits (224), Expect = 4e-47
Identities = 777/1197 (65%), Gaps = 46/1197 (4%)
Strand=Plus/Plus
Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950
||| | |||||| || || || || || ||||||| || | ||| | || |||||
Sbjct 74286 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTC 74345
Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010
|||||| || ||| | || || |||| ||||| ||||| ||||| ||| ||
Sbjct 74346 AGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 74405
Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070
|| || ||||| ||||| || | ||||||||| |||| | ||| | ||| || |
Sbjct 74406 GTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATA 74465
Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGT-- 63127
||| | | || | ||||| | | || | | | | ||| ||| ||| | |
Sbjct 74466 CCACA-GCTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTC 74522
Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGAC 63186
||||| || ||||| || || | || | | |||| || || ||||||| || |
Sbjct 74523 ATACAGAGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGC 74581
Query 63187 ACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCC 63243
|||| | || ||| || |||| |||| || || ||||| || || ||| ||||
Sbjct 74582 ACATGAGCGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCC 74638
Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303
| || || | |||||| || | | | ||| || ||||| ||||| || |
Sbjct 74639 AGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGT 74698
Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363
|||||||| | | | ||||| |||||| || || | ||| || || | |||| || |
Sbjct 74699 CGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTC 74758
Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423
| |||||||| ||||| || | || | |||||||| || |||| | || ||| ||||
Sbjct 74759 GCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAA 74818
Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TT 63481
||| ||||| || |||| || || || | || ||| ||| ||||||||||| |
Sbjct 74819 CAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGT 74878
Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541
|||| ||||| || || || ||||| || || || | ||||| || | ||
Sbjct 74879 GAACATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGT 74936
Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601
|| || || || || || || ||||| |||||| || ||| ||||| ||||| ||
Sbjct 74937 ATCGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG 74996
Query 63602 GTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657
|| || ||| || ||||| || | ||||| || ||||| || || | ||
Sbjct 74997 ----CGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGC 75052
Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGC---TGAGTCTAT---ATCCCATTGATGAATTC 63711
||| | || ||||| || |||| | | | || | | |||| ||| |
Sbjct 75053 TAGACATAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATAC 75106
Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771
| || || |||||||||| ||||||||| || | ||||||||||||| || | ||| |
Sbjct 75107 CCACAGCAACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGA 75166
Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831
|| || || || | || || || ||||| || | ||| ||||| || ||||
Sbjct 75167 GCAGATACGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGT 75226
Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT- 63890
| | || | |||| || | |||||| | ||| | | ||| || |||
Sbjct 75227 ACACGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTT 75284
Query 63891 -GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCAT 63949
|| || || ||||| || | || ||| |||||||| | | | | || ||
Sbjct 75285 GGAGATCATAGGAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACAC 75344
Query 63950 CACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGG 64008
||| | || | || | || || |||| |||||| ||||| || || || || | ||| |
Sbjct 75345 CAC-TGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAG 75403
Query 64009 CTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064
| || ||||||||||| ||||| ||| | || || ||| || ||||||| |||
Sbjct 75404 CCAGGATGGCATAATCGGGATG-GGTGACGGTCATGTAGGCGGCAGTTTCGGCAGCC 75459
Score = 100 bits (110), Expect = 4e-16
Identities = 212/316 (67%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042
|||| ||||| |||||||| ||||| || | || | | ||||||||| ||||||||
Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428
Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102
||||| || || || || |||| ||| ||| ||||| || || | ||| |
Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488
Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162
|||||| || || || || | ||| || ||| || ||||| || || | ||| |||
Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548
Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222
||||||| || | || || | ||| ||||||| || || || | ||||||
Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608
Query 62223 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279
|| |||| | | | | ||||||||||| || || || ||||| | ||||||
Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668
Query 62280 ATCTCATCATTCCATA 62295
|| | ||| |||||
Sbjct 73669 ATATTGTCAGACCATA 73684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622940869299080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |