Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq545 203 4e-47 >seq545 Length=97716 Score = 203 bits (224), Expect = 4e-47 Identities = 777/1197 (65%), Gaps = 46/1197 (4%) Strand=Plus/Plus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||| | |||||| || || || || || ||||||| || | ||| | || ||||| Sbjct 74286 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTC 74345 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 |||||| || ||| | || || |||| ||||| ||||| ||||| ||| || Sbjct 74346 AGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 74405 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 || || ||||| ||||| || | ||||||||| |||| | ||| | ||| || | Sbjct 74406 GTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATA 74465 Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGT-- 63127 ||| | | || | ||||| | | || | | | | ||| ||| ||| | | Sbjct 74466 CCACA-GCTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTC 74522 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGAC 63186 ||||| || ||||| || || | || | | |||| || || ||||||| || | Sbjct 74523 ATACAGAGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGC 74581 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCC 63243 |||| | || ||| || |||| |||| || || ||||| || || ||| |||| Sbjct 74582 ACATGAGCGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCC 74638 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | || || | |||||| || | | | ||| || ||||| ||||| || | Sbjct 74639 AGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGT 74698 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 |||||||| | | | ||||| |||||| || || | ||| || || | |||| || | Sbjct 74699 CGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTC 74758 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 | |||||||| ||||| || | || | |||||||| || |||| | || ||| |||| Sbjct 74759 GCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAA 74818 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TT 63481 ||| ||||| || |||| || || || | || ||| ||| ||||||||||| | Sbjct 74819 CAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGT 74878 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 |||| ||||| || || || ||||| || || || | ||||| || | || Sbjct 74879 GAACATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGT 74936 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 || || || || || || || ||||| |||||| || ||| ||||| ||||| || Sbjct 74937 ATCGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG 74996 Query 63602 GTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657 || || ||| || ||||| || | ||||| || ||||| || || | || Sbjct 74997 ----CGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGC 75052 Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGC---TGAGTCTAT---ATCCCATTGATGAATTC 63711 ||| | || ||||| || |||| | | | || | | |||| ||| | Sbjct 75053 TAGACATAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATAC 75106 Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771 | || || |||||||||| ||||||||| || | ||||||||||||| || | ||| | Sbjct 75107 CCACAGCAACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGA 75166 Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 || || || || | || || || ||||| || | ||| ||||| || |||| Sbjct 75167 GCAGATACGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGT 75226 Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT- 63890 | | || | |||| || | |||||| | ||| | | ||| || ||| Sbjct 75227 ACACGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTT 75284 Query 63891 -GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCAT 63949 || || || ||||| || | || ||| |||||||| | | | | || || Sbjct 75285 GGAGATCATAGGAGACGCCTTGCGGTTCGCAGGGTTAACATAATGGTAGAGGTCAGACAC 75344 Query 63950 CACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGG 64008 ||| | || | || | || || |||| |||||| ||||| || || || || | ||| | Sbjct 75345 CAC-TGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCAG 75403 Query 64009 CTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 | || ||||||||||| ||||| ||| | || || ||| || ||||||| ||| Sbjct 75404 CCAGGATGGCATAATCGGGATG-GGTGACGGTCATGTAGGCGGCAGTTTCGGCAGCC 75459 Score = 100 bits (110), Expect = 4e-16 Identities = 212/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||||| |||||||| ||||| || | || | | ||||||||| |||||||| Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 ||||| || || || || |||| ||| ||| ||||| || || | ||| | Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 |||||| || || || || | ||| || ||| || ||||| || || | ||| ||| Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 ||||||| || | || || | ||| ||||||| || || || | |||||| Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608 Query 62223 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 || |||| | | | | ||||||||||| || || || ||||| | |||||| Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668 Query 62280 ATCTCATCATTCCATA 62295 || | ||| ||||| Sbjct 73669 ATATTGTCAGACCATA 73684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940869299080