Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq545 363 4e-95
seq126 84.2 6e-11
>seq545
Length=97716
Score = 363 bits (402), Expect = 4e-95
Identities = 1140/1739 (66%), Gaps = 40/1739 (2%)
Strand=Plus/Minus
Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501
|| |||||||| || ||||| ||| |||||||||||||| | ||||| ||| ||
Sbjct 75149 ATCGTTGAACGTCCCCAGCACATGATAATGCGTGTTGCTGTGGGTAT---TTGGGGTGAC 75093
Query 363502 ---GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATTCACGCACGC 363557
|| || || | ||||||| || || ||| | | || || | ||||| |||||
Sbjct 75092 AAAGTCGAACGCGTGCTTGAAACCTACAACCTTATGTCTAGCAAGT-TCTTCACTCACGC 75034
Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617
| || || | | |||||| || |||| | | ||| ||||||| || || || |
Sbjct 75033 ATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCATGTTTCCTAGT 74974
Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677
| ||||| || || ||||| || || | || || || |||| ||| || | ||
Sbjct 74973 TGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACTTGCGCCATGAT 74914
Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736
|||||||| || || || || ||| | | ||| | ||||||| || | | |
Sbjct 74913 TTCCAAGATGGCCGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCCACTGG-CTCCT 74855
Query 363737 ACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795
||||| ||||| || |||| |||| || | ||||||||||| ||||| || ||
Sbjct 74854 ACATTGCTGGCACTAACGG-TACTTCGAACGGCATTGTTCCCATGCTGCGTGTTTTCAAC 74796
Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855
|| || || | || || |||||||||||| ||||| || || |||||||| ||
Sbjct 74795 AACACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCCGGAGCCTTTGCTATTTAC 74736
Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915
|||||||| ||||| ||| | |||||||| || || || || || ||| |||||
Sbjct 74735 CTCGAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCAAGAACCACGGAAAG 74676
Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975
|| ||| | ||||| ||||| || || | || || ||| | | ||||| || ||||||
Sbjct 74675 GAAGAAGTCCGTGCTCGTGACCTATTTTTGGCCCTCTGGATCTGTGACCTGTTCATGAAG 74616
Query 363976 CGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035
|| || ||| | || | ||| | ||| | ||||| | ||||| ||||| | |
Sbjct 74615 CGTGTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAATGCCCAGGCTTGGCA 74556
Query 364036 GA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093
|| || ||| || || || | || ||||| || ||||||||||| |||||| |
Sbjct 74555 GACTGCTAT--GGCGAAGAGTTTGAGGCTCTGTATGAAAAGTATGAGAAGGAGGGTCGCG 74498
Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153
||| | | | || |||||||| |||| |||||| |||| | |||| ||| |
Sbjct 74497 GTCGCATGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAAGCCCAGACTGAAA 74438
Query 364154 CAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212
| || | ||||| | ||| | |||||||| |||||||||||| ||| ||| | |
Sbjct 74437 CTGGCA-ACCCTTTCATGCTTTACAAAGACCACTGCAACCGCAAGAGCAATCAGAAAAAT 74379
Query 364213 CTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271
|| ||||| |||| |||| | |||||||| || ||||||||||| || || || ||
Sbjct 74378 CTAGGTACCATTC-GCAGCTCTAACCTATGCACTGAGATTATTGAGTATTGTGCCCCTGA 74320
Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGA 364325
||| || || || ||||| || || |||| ||||| | || || || |
Sbjct 74319 TGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCTTCGTGGACTACAACAA 74260
Query 364326 TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGA 364385
||| | |||| | | || | || || ||| | || | | | || || |
Sbjct 74259 GGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAGGTTGTTGTTCGAAACCTGAA 74200
Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCA 364445
| | || || ||| | ||||| | | ||||| | || ||||| ||
Sbjct 74199 CCGCATCATTGATGTGAACCACTATCCTGTACAGGAAGCTCACAACAGCAACATGCGCCA 74140
Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAA--GATG 364503
||| || ||||| ||||||| ||||| || ||||||| || | ||||| | |||
Sbjct 74139 TCGTCCCATTGGCGTTGGTGTGCAGGGTCTGGCTGACGCCTTCCT--TGCTCTACGCATG 74082
Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563
| ||||| || ||||| || ||| || || ||| | || |||||||| || ||
Sbjct 74081 CCTTTTGAGTCCCCTGAAGCACGTCAGCTCAACAAGCAAATATTTGAAACCATCTACCAC 74022
Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623
|| ||| ||||||||||| || | || | ||| |||| | ||||| || ||||||
Sbjct 74021 GCTGCACTGACTGCTTCGATGGAAATCGCCCAGACCGAGGGTACTTACTCAACCTATGAG 73962
Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683
|| || ||| | || || || | | ||||||||| | ||| |||| || || || |
Sbjct 73961 GGTTCTCCTGTCTCCCAAGGCATCCTGCAGTTTGATATGTGGGATGTGACTCCCAGTGAC 73902
Query 364684 CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC---C 364740
| ||| | ||| | | || || |||| |||||||| ||||| ||
Sbjct 73901 CTGTGGGATTGGACTTCTCTGAAGGAGAAGATTAAACAGCATGGTGTACGCAATTCTCTT 73842
Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800
|||||| || |||||||| || || || ||||||| || || ||||| ||||||
Sbjct 73841 CTCGTT---GCACCCATGCCTACAGCCAGCACATCACAGATTCTTGGCAACAATGAGTGC 73785
Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860
|| ||||| | || ||| | || ||||| |||||| | || || || | |||
Sbjct 73784 TTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 73725
Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920
|| || | || | || || ||| | || || ||| ||||| ||||||
Sbjct 73724 GTCAACCCCTGGCTTCTACGTGACCTGGTCGATCTTGGTCTATGGTCTGACAATATGAAG 73665
Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACA-TTCCAGGATTTCCAGAAGATCT 364979
|| || || |||| || || || | ||||||| |||||| | |||| ||| |
Sbjct 73664 AATCGCATTATTGCCGACAACGGCTCCATTCAGAACATTTCCAGCA-TTCCTCCTGATAT 73606
Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039
|| || | ||||| || || ||||| |||||| ||| || | | | ||||| ||
Sbjct 73605 TAAAGCTCTGTACAAGACGGTTTGGGAGATTTCCCAGCGTACAGTTGTACAAATGGCTGC 73546
Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGC-CAGTCGTTTAACGTATTCATGACTCAGCCAA 365098
|| || |||||||| || || | | | ||||| | ||| | ||||| | || |
Sbjct 73545 TGACCGTGGTGCTTTCAT-TGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCCA 73487
Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157
|| | |||| | || |||||| || ||| |||||| || || ||||| |||
Sbjct 73486 CCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAACTGGGCCTCAAGACGGGT 73428
>seq126
Length=40607
Score = 84.2 bits (92), Expect = 6e-11
Identities = 146/212 (69%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAACGTCTT 22497
||||| || ||||| ||||| ||||| | |||| || | ||||| | || ||
Sbjct 38307 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTG 38248
Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557
| || || |||| || |||||||| || || || || || || | || || |||
Sbjct 38247 GTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGG 38188
Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617
|| || |||| | ||||| ||||| || || ||||| ||| | ||| ||| |||
Sbjct 38187 CTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGAT 38128
Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649
|||||||| || ||||| ||||| || ||||
Sbjct 38127 GAGGGTCTGCACACCGACTTTGCTTGCCTGCT 38096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303340023535766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |