Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq545 363 4e-95 seq126 84.2 6e-11 >seq545 Length=97716 Score = 363 bits (402), Expect = 4e-95 Identities = 1140/1739 (66%), Gaps = 40/1739 (2%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 || |||||||| || ||||| ||| |||||||||||||| | ||||| ||| || Sbjct 75149 ATCGTTGAACGTCCCCAGCACATGATAATGCGTGTTGCTGTGGGTAT---TTGGGGTGAC 75093 Query 363502 ---GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATTCACGCACGC 363557 || || || | ||||||| || || ||| | | || || | ||||| ||||| Sbjct 75092 AAAGTCGAACGCGTGCTTGAAACCTACAACCTTATGTCTAGCAAGT-TCTTCACTCACGC 75034 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 | || || | | |||||| || |||| | | ||| ||||||| || || || | Sbjct 75033 ATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCATGTTTCCTAGT 74974 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 | ||||| || || ||||| || || | || || || |||| ||| || | || Sbjct 74973 TGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACTTGCGCCATGAT 74914 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 |||||||| || || || || ||| | | ||| | ||||||| || | | | Sbjct 74913 TTCCAAGATGGCCGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCCACTGG-CTCCT 74855 Query 363737 ACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 ||||| ||||| || |||| |||| || | ||||||||||| ||||| || || Sbjct 74854 ACATTGCTGGCACTAACGG-TACTTCGAACGGCATTGTTCCCATGCTGCGTGTTTTCAAC 74796 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 || || || | || || |||||||||||| ||||| || || |||||||| || Sbjct 74795 AACACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCCGGAGCCTTTGCTATTTAC 74736 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915 |||||||| ||||| ||| | |||||||| || || || || || ||| ||||| Sbjct 74735 CTCGAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCAAGAACCACGGAAAG 74676 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 || ||| | ||||| ||||| || || | || || ||| | | ||||| || |||||| Sbjct 74675 GAAGAAGTCCGTGCTCGTGACCTATTTTTGGCCCTCTGGATCTGTGACCTGTTCATGAAG 74616 Query 363976 CGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || || ||| | || | ||| | ||| | ||||| | ||||| ||||| | | Sbjct 74615 CGTGTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAATGCCCAGGCTTGGCA 74556 Query 364036 GA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 || || ||| || || || | || ||||| || ||||||||||| |||||| | Sbjct 74555 GACTGCTAT--GGCGAAGAGTTTGAGGCTCTGTATGAAAAGTATGAGAAGGAGGGTCGCG 74498 Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 ||| | | | || |||||||| |||| |||||| |||| | |||| ||| | Sbjct 74497 GTCGCATGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAAGCCCAGACTGAAA 74438 Query 364154 CAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 | || | ||||| | ||| | |||||||| |||||||||||| ||| ||| | | Sbjct 74437 CTGGCA-ACCCTTTCATGCTTTACAAAGACCACTGCAACCGCAAGAGCAATCAGAAAAAT 74379 Query 364213 CTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 || ||||| |||| |||| | |||||||| || ||||||||||| || || || || Sbjct 74378 CTAGGTACCATTC-GCAGCTCTAACCTATGCACTGAGATTATTGAGTATTGTGCCCCTGA 74320 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGA 364325 ||| || || || ||||| || || |||| ||||| | || || || | Sbjct 74319 TGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCTTCGTGGACTACAACAA 74260 Query 364326 TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGA 364385 ||| | |||| | | || | || || ||| | || | | | || || | Sbjct 74259 GGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAGGTTGTTGTTCGAAACCTGAA 74200 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCA 364445 | | || || ||| | ||||| | | ||||| | || ||||| || Sbjct 74199 CCGCATCATTGATGTGAACCACTATCCTGTACAGGAAGCTCACAACAGCAACATGCGCCA 74140 Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAA--GATG 364503 ||| || ||||| ||||||| ||||| || ||||||| || | ||||| | ||| Sbjct 74139 TCGTCCCATTGGCGTTGGTGTGCAGGGTCTGGCTGACGCCTTCCT--TGCTCTACGCATG 74082 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 | ||||| || ||||| || ||| || || ||| | || |||||||| || || Sbjct 74081 CCTTTTGAGTCCCCTGAAGCACGTCAGCTCAACAAGCAAATATTTGAAACCATCTACCAC 74022 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || ||| ||||||||||| || | || | ||| |||| | ||||| || |||||| Sbjct 74021 GCTGCACTGACTGCTTCGATGGAAATCGCCCAGACCGAGGGTACTTACTCAACCTATGAG 73962 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || || ||| | || || || | | ||||||||| | ||| |||| || || || | Sbjct 73961 GGTTCTCCTGTCTCCCAAGGCATCCTGCAGTTTGATATGTGGGATGTGACTCCCAGTGAC 73902 Query 364684 CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC---C 364740 | ||| | ||| | | || || |||| |||||||| ||||| || Sbjct 73901 CTGTGGGATTGGACTTCTCTGAAGGAGAAGATTAAACAGCATGGTGTACGCAATTCTCTT 73842 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 |||||| || |||||||| || || || ||||||| || || ||||| |||||| Sbjct 73841 CTCGTT---GCACCCATGCCTACAGCCAGCACATCACAGATTCTTGGCAACAATGAGTGC 73785 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 || ||||| | || ||| | || ||||| |||||| | || || || | ||| Sbjct 73784 TTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 73725 Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 || || | || | || || ||| | || || ||| ||||| |||||| Sbjct 73724 GTCAACCCCTGGCTTCTACGTGACCTGGTCGATCTTGGTCTATGGTCTGACAATATGAAG 73665 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACA-TTCCAGGATTTCCAGAAGATCT 364979 || || || |||| || || || | ||||||| |||||| | |||| ||| | Sbjct 73664 AATCGCATTATTGCCGACAACGGCTCCATTCAGAACATTTCCAGCA-TTCCTCCTGATAT 73606 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 || || | ||||| || || ||||| |||||| ||| || | | | ||||| || Sbjct 73605 TAAAGCTCTGTACAAGACGGTTTGGGAGATTTCCCAGCGTACAGTTGTACAAATGGCTGC 73546 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGC-CAGTCGTTTAACGTATTCATGACTCAGCCAA 365098 || || |||||||| || || | | | ||||| | ||| | ||||| | || | Sbjct 73545 TGACCGTGGTGCTTTCAT-TGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCCA 73487 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 || | |||| | || |||||| || ||| |||||| || || ||||| ||| Sbjct 73486 CCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAACTGGGCCTCAAGACGGGT 73428 >seq126 Length=40607 Score = 84.2 bits (92), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAACGTCTT 22497 ||||| || ||||| ||||| ||||| | |||| || | ||||| | || || Sbjct 38307 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTG 38248 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 | || || |||| || |||||||| || || || || || || | || || ||| Sbjct 38247 GTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGG 38188 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || || |||| | ||||| ||||| || || ||||| ||| | ||| ||| ||| Sbjct 38187 CTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGAT 38128 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 |||||||| || ||||| ||||| || |||| Sbjct 38127 GAGGGTCTGCACACCGACTTTGCTTGCCTGCT 38096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340023535766