Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq734 136 4e-27 seq357 122 8e-23 seq160 120 3e-22 seq545 118 1e-21 seq126 118 1e-21 >seq734 Length=84471 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||| || || || | || |||||||||||||| ||||| ||| Sbjct 21218 GCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGA 21277 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| |||||||| || ||| | || | ||||||||||||||| || Sbjct 21278 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21337 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 21338 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21397 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || |||||||| || ||||| || ||||| Sbjct 21398 CTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || |||||||| || |||||||| ||| Sbjct 21447 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 21506 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || || | || | ||||||||||||||| || Sbjct 21507 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGA 21566 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||| | Sbjct 21567 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACT 21626 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || |||||||| || ||||| || ||||| Sbjct 21627 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || || ||||| ||| Sbjct 21675 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGAT 21734 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | ||||||||||||||| || Sbjct 21735 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21794 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 21795 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACC 21854 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||||| ||| || || || Sbjct 21855 TCGAGGGTAATGGTCTTGCCAGT 21877 >seq357 Length=115873 Score = 122 bits (134), Expect = 8e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| || || |||||| ||||| ||||||||||| ||| ||| Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||||||||| || || || ||||| || || ||||| | | Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | ||| || | |||||| | |||| ||||| || ||||| || || || || |||| Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051 Query 131225 AAATCTGCAT 131234 |||||||||| Sbjct 6052 AAATCTGCAT 6061 >seq160 Length=36261 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | ||| |||||||| || |||||||| ||| | Sbjct 3377 CCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3436 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| || |||||||||||||| || Sbjct 3437 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 3496 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 3497 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 3556 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||||| ||| ||||| || || || || |||||| Sbjct 3557 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595 >seq545 Length=97716 Score = 118 bits (130), Expect = 1e-21 Identities = 464/726 (64%), Gaps = 8/726 (1%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | || || ||| || | ||| |||||| ||||| Sbjct 73720 TTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGT 73779 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| |||| || ||||| || || || | || | || || |||||| || || Sbjct 73780 TCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACG 73839 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | |||||||| | || |||| || || | ||||| || | | ||||||||| Sbjct 73840 AGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCAC 73899 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || | | || |||| |||||||| || |||||| ||||| | | | | || Sbjct 73900 AGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAA 73959 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-TCGCCTCCAGAGC 145356 || | | ||| |||| | ||| || | ||||| || || | || ||| || Sbjct 73960 CCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGATTTC-CATCGAAGCAGTCAGTGC 74018 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416 || || || || || |||||| |||||||| | |||||| | ||| | Sbjct 74019 AGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTGCTTCAGGGGACTCAAA 74078 Query 145417 CGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCG 145476 |||||||| || | || || || || || ||||| | || ||||| ||||| || Sbjct 74079 AGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACG 74138 Query 145477 ATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536 ||| ||||||||| | || || | |||||| | || || || || Sbjct 74139 ATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCG 74198 Query 145537 ATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGC 145596 |||| |||||| || || |||| || | | | | ||||| ||||||| || | | Sbjct 74199 GTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACC 74258 Query 145597 CTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTC 145656 || || | |||| || | | ||||| || || | || || || || ||| Sbjct 74259 CTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTC 74318 Query 145657 CTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTTCC 145713 || | | | | || | | ||||| | ||| | || ||| | ||||| || Sbjct 74319 ATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGC---GAATGGTACC 74375 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||||||| |||||| || || | |||||| ||| ||||| |||||| | || ||| Sbjct 74376 TAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCC 74435 Query 145774 AGTCTC 145779 ||| || Sbjct 74436 AGTTTC 74441 >seq126 Length=40607 Score = 118 bits (130), Expect = 1e-21 Identities = 352/536 (66%), Gaps = 9/536 (2%) Strand=Plus/Minus Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122 ||| | ||||| |||| ||| || ||| | ||| || |||||||||| ||||| Sbjct 38346 CTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAG 38287 Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182 ||||||| | || |||| |||||| |||| |||| || || || ||| || Sbjct 38286 TGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAGCTTTCGCTGCTGTCGAA 38227 Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTT-TTACATCAAAACCAAGGGCATCAT 46241 ||| ||||||| || || ||| ||| | || || | | | || | || | |||| Sbjct 38226 GGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGCGCAAGCGTGGTC-TCAT 38168 Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301 ||| || ||||| || |||||||| || || || || ||||| ||||| || ||||| Sbjct 38167 GCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGGGTCTGCACACCGACTT 38108 Query 46302 TGCGTGTCT-CTACTATAACACTCGCGTGCACGACAAGCTTGCGC-CCGACACCGTGCTG 46359 ||| || || || | | ||| | || || || || || ||| ||||| Sbjct 38107 TGCTTGCCTGCTGTTCTCACA----CCTGAACAAC-CGCCCCAGCAAGGACCTCGTGCAA 38053 Query 46360 AGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCT 46419 | || ||| || || || | || ||||||||||| | |||| || |||||| | Sbjct 38052 AAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGT 37993 Query 46420 GCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGA 46479 | || ||||| |||||||| | ||| | ||||| |||||||| || ||||| Sbjct 37992 GGTCTACTGGGAATGAACGCCGATCTGATGAAGCAATACATTGAGTTTGTTGCTGACCGC 37933 Query 46480 CTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATG 46539 ||||| || || | | |||| || | || || || || || || ||| Sbjct 37932 CTGCTTGTTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGACTTCATG 37873 Query 46540 AACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | |||||||| || | ||||| || || || || || ||||| ||||| || || Sbjct 37872 GAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 37817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008003169920