Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq734 136 4e-27
seq357 122 8e-23
seq160 120 3e-22
seq545 118 1e-21
seq126 118 1e-21
>seq734
Length=84471
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| ||||| || || || | || |||||||||||||| ||||| |||
Sbjct 21218 GCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGA 21277
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| ||||| |||||||| || ||| | || | ||||||||||||||| ||
Sbjct 21278 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21337
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| ||| || ||||| | || | ||||| | ||||| |
Sbjct 21338 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21397
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||||| ||| || || |||||||| || ||||| || |||||
Sbjct 21398 CTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| || | || | || |||||||| || |||||||| |||
Sbjct 21447 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 21506
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| || ||||| || || | || | ||||||||||||||| ||
Sbjct 21507 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGA 21566
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||||||| ||||| |
Sbjct 21567 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACT 21626
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||||| ||| || || |||||||| || ||||| || |||||
Sbjct 21627 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| || | || | || || || || || || ||||| |||
Sbjct 21675 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGAT 21734
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| |||||||| || ||| | || | ||||||||||||||| ||
Sbjct 21735 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21794
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||||| | ||||| |
Sbjct 21795 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACC 21854
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||||| ||| || || ||
Sbjct 21855 TCGAGGGTAATGGTCTTGCCAGT 21877
>seq357
Length=115873
Score = 122 bits (134), Expect = 8e-23
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| ||||||||||| || || |||||| ||||| ||||||||||| ||| |||
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | ||||||||||||||||| || || || ||||| || || ||||| | |
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | ||| || | |||||| | |||| ||||| || ||||| || || || || ||||
Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051
Query 131225 AAATCTGCAT 131234
||||||||||
Sbjct 6052 AAATCTGCAT 6061
>seq160
Length=36261
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | |||||| || | || | ||| |||||||| || |||||||| ||| |
Sbjct 3377 CCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3436
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| ||||||||||| || |||| || |||||||||||||| ||
Sbjct 3437 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 3496
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || || | |||||||
Sbjct 3497 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 3556
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226
|| | ||||| ||| ||||| || || || || ||||||
Sbjct 3557 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595
>seq545
Length=97716
Score = 118 bits (130), Expect = 1e-21
Identities = 464/726 (64%), Gaps = 8/726 (1%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||||||||| |||||||| || | || || ||| || | ||| |||||| |||||
Sbjct 73720 TTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGT 73779
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
||||| |||| || ||||| || || || | || | || || |||||| || ||
Sbjct 73780 TCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACG 73839
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| | |||||||| | || |||| || || | ||||| || | | |||||||||
Sbjct 73840 AGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCAC 73899
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| | | || |||| |||||||| || |||||| ||||| | | | | ||
Sbjct 73900 AGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAA 73959
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-TCGCCTCCAGAGC 145356
|| | | ||| |||| | ||| || | ||||| || || | || ||| ||
Sbjct 73960 CCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGATTTC-CATCGAAGCAGTCAGTGC 74018
Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416
|| || || || || |||||| |||||||| | |||||| | ||| |
Sbjct 74019 AGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTGCTTCAGGGGACTCAAA 74078
Query 145417 CGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCG 145476
|||||||| || | || || || || || ||||| | || ||||| ||||| ||
Sbjct 74079 AGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACG 74138
Query 145477 ATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536
||| ||||||||| | || || | |||||| | || || || ||
Sbjct 74139 ATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCG 74198
Query 145537 ATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGC 145596
|||| |||||| || || |||| || | | | | ||||| ||||||| || | |
Sbjct 74199 GTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACC 74258
Query 145597 CTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTC 145656
|| || | |||| || | | ||||| || || | || || || || |||
Sbjct 74259 CTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTC 74318
Query 145657 CTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTTCC 145713
|| | | | | || | | ||||| | ||| | || ||| | ||||| ||
Sbjct 74319 ATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGC---GAATGGTACC 74375
Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773
||||||| |||||| || || | |||||| ||| ||||| |||||| | || |||
Sbjct 74376 TAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCC 74435
Query 145774 AGTCTC 145779
||| ||
Sbjct 74436 AGTTTC 74441
>seq126
Length=40607
Score = 118 bits (130), Expect = 1e-21
Identities = 352/536 (66%), Gaps = 9/536 (2%)
Strand=Plus/Minus
Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122
||| | ||||| |||| ||| || ||| | ||| || |||||||||| |||||
Sbjct 38346 CTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAG 38287
Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182
||||||| | || |||| |||||| |||| |||| || || || ||| ||
Sbjct 38286 TGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAGCTTTCGCTGCTGTCGAA 38227
Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTT-TTACATCAAAACCAAGGGCATCAT 46241
||| ||||||| || || ||| ||| | || || | | | || | || | ||||
Sbjct 38226 GGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGCGCAAGCGTGGTC-TCAT 38168
Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301
||| || ||||| || |||||||| || || || || ||||| ||||| || |||||
Sbjct 38167 GCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGGGTCTGCACACCGACTT 38108
Query 46302 TGCGTGTCT-CTACTATAACACTCGCGTGCACGACAAGCTTGCGC-CCGACACCGTGCTG 46359
||| || || || | | ||| | || || || || || ||| |||||
Sbjct 38107 TGCTTGCCTGCTGTTCTCACA----CCTGAACAAC-CGCCCCAGCAAGGACCTCGTGCAA 38053
Query 46360 AGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCT 46419
| || ||| || || || | || ||||||||||| | |||| || |||||| |
Sbjct 38052 AAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGT 37993
Query 46420 GCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGA 46479
| || ||||| |||||||| | ||| | ||||| |||||||| || |||||
Sbjct 37992 GGTCTACTGGGAATGAACGCCGATCTGATGAAGCAATACATTGAGTTTGTTGCTGACCGC 37933
Query 46480 CTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATG 46539
||||| || || | | |||| || | || || || || || || |||
Sbjct 37932 CTGCTTGTTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGACTTCATG 37873
Query 46540 AACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
| |||||||| || | ||||| || || || || || ||||| ||||| || ||
Sbjct 37872 GAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 37817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472008003169920
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