Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq103 131 1e-25
seq490 84.2 1e-11
>seq103
Length=46166
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 17054 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 16995
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 16994 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 16960
>seq490
Length=105142
Score = 84.2 bits (92), Expect = 1e-11
Identities = 193/289 (67%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAAACGGT 6257
||||||||| ||||| ||||| || ||| | |||| | ||||| ||||| || |||
Sbjct 50286 GTTCTACCGGTACAAGATGCCCCG--TCTTCAAACCAAAATTGAGGGCAAGGGTAATGGT 50343
Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317
|| || || || |||| ||| || ||| || || || | || | ||||||| | ||
Sbjct 50344 ATCAAGACTGTTGTTGTGAACCTGTCTGCTGTTGCCCAGTCTCTGGCTCGCCCTGGCTCC 50403
Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377
| || ||||| || || | || || || || ||||| | |||||| | |
Sbjct 50404 CATTTGATCAAATACTTTGGCTTTGAGCTGGGTGCCCAGACCAACATTGATCCCCCGGAT 50463
Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437
|| |||| || | || || || || | | |||||||||||| | | ||
Sbjct 50464 GACCGCTGGATTATCAATGGTTCCCACGATACCAAAAAGCTGCAGGACCATGTCTATGGA 50523
Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
|| |||| ||||||||| ||||| | | ||| | ||||| |||||||
Sbjct 50524 TTCATTCTCAAGTTTGTCCTGTGCAAGAAGTGCAAGAACCCTGAGACCG 50572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334943881196603
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |