Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq103 131 1e-25 seq490 84.2 1e-11 >seq103 Length=46166 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 17054 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 16995 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 16994 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 16960 >seq490 Length=105142 Score = 84.2 bits (92), Expect = 1e-11 Identities = 193/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAAACGGT 6257 ||||||||| ||||| ||||| || ||| | |||| | ||||| ||||| || ||| Sbjct 50286 GTTCTACCGGTACAAGATGCCCCG--TCTTCAAACCAAAATTGAGGGCAAGGGTAATGGT 50343 Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317 || || || || |||| ||| || ||| || || || | || | ||||||| | || Sbjct 50344 ATCAAGACTGTTGTTGTGAACCTGTCTGCTGTTGCCCAGTCTCTGGCTCGCCCTGGCTCC 50403 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 | || ||||| || || | || || || || ||||| | |||||| | | Sbjct 50404 CATTTGATCAAATACTTTGGCTTTGAGCTGGGTGCCCAGACCAACATTGATCCCCCGGAT 50463 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || |||| || | || || || || | | |||||||||||| | | || Sbjct 50464 GACCGCTGGATTATCAATGGTTCCCACGATACCAAAAAGCTGCAGGACCATGTCTATGGA 50523 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || |||| ||||||||| ||||| | | ||| | ||||| ||||||| Sbjct 50524 TTCATTCTCAAGTTTGTCCTGTGCAAGAAGTGCAAGAACCCTGAGACCG 50572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943881196603