Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq545 210 3e-49
>seq545
Length=97716
Score = 210 bits (232), Expect = 3e-49
Identities = 644/982 (66%), Gaps = 38/982 (4%)
Strand=Plus/Plus
Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811
|||||| || || || || || ||||||| || | ||| | || |||||||||||
Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351
Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871
|| ||| | ||||| |||| ||||| ||||| ||||| ||| || ||
Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411
Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931
|| ||||| ||||| || | ||||||||| |||| | ||| | ||| || | ||| |
Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA- 74470
Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAA 62988
| || | ||||| | | || | | | | ||| ||| ||| | | |||||
Sbjct 74471 GCTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAG 74528
Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTGT-CCAGTCCAGGACATTCATCCGGACACATCA 63047
|| ||||| || || | || | | ||| || || ||||||| || ||||| |
Sbjct 74529 AGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGA 74587
Query 63048 ACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63104
|| ||| || |||| |||| || || ||||| || || ||| ||||| || |
Sbjct 74588 GCGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGG 74644
Query 63105 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63164
| | |||||| || | | | ||| || ||||| ||||| || |||||||
Sbjct 74645 CCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGA 74704
Query 63165 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63224
|| | | | ||||| |||||| || || | ||| || || | |||| || || ||||
Sbjct 74705 ACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGT 74764
Query 63225 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63284
|||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| |
Sbjct 74765 TTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGC 74824
Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--TTACTAAT 63342
| || || ||||| || || || | || ||| ||| ||||||||||| | ||
Sbjct 74825 CGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACAT 74884
Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402
|| ||||| || || || ||||| || || || | ||||| || | ||||| ||
Sbjct 74885 TG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTA 74942
Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462
||||| || ||||| ||||| |||||| || ||| ||||| ||||| || ||
Sbjct 74943 AATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG----CG 74998
Query 63463 ACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518
|| ||| || ||||| || | ||||| || |||||||| || | || ||| |
Sbjct 74999 CCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACA 75058
Query 63519 GTAGATTGTACGTCTCAATAGC---TGAGTCTAT---ATCCCATTGATGAATTCCTACTG 63572
|| ||||| || |||| | | | || | | |||| ||| || || |
Sbjct 75059 TAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATACCCACAG 75112
Query 63573 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63632
| |||||||||| ||||||||| || | ||||||||||||| || | ||| | || |
Sbjct 75113 CAACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGAT 75172
Query 63633 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63692
| || || | || || || ||||| || | ||| ||||| || ||||| | |
Sbjct 75173 ACGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGA 75232
Query 63693 TAACCGAGTTGAGTTTATCCTT 63714
| | |||| || | ||||||
Sbjct 75233 TGGCAGAGTCCAGCTCATCCTT 75254
Score = 104 bits (114), Expect = 3e-17
Identities = 213/316 (67%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897
|||| ||||| |||||||| ||||| || | || | | ||||||||| ||||||||
Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428
Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957
||||| || || || || |||| ||| ||| ||||| || || | ||| |
Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488
Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017
|||||| || || || || | ||| || ||| || ||||| || || | ||| |||
Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548
Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077
||||||| || || || || | ||| ||||||| || || || | ||||||
Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608
Query 62078 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134
|| |||| | | | | ||||||||||| || || || ||||| | ||||||
Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668
Query 62135 ATCTCATCATTCCATA 62150
|| | ||| |||||
Sbjct 73669 ATATTGTCAGACCATA 73684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633625560714800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |