Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq545 210 3e-49 >seq545 Length=97716 Score = 210 bits (232), Expect = 3e-49 Identities = 644/982 (66%), Gaps = 38/982 (4%) Strand=Plus/Plus Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 |||||| || || || || || ||||||| || | ||| | || ||||||||||| Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || ||| | ||||| |||| ||||| ||||| ||||| ||| || || Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 || ||||| ||||| || | ||||||||| |||| | ||| | ||| || | ||| | Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA- 74470 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAA 62988 | || | ||||| | | || | | | | ||| ||| ||| | | ||||| Sbjct 74471 GCTTCTGGGCCTTGACAACC-ATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAG 74528 Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTGT-CCAGTCCAGGACATTCATCCGGACACATCA 63047 || ||||| || || | || | | ||| || || ||||||| || ||||| | Sbjct 74529 AGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGA 74587 Query 63048 ACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63104 || ||| || |||| |||| || || ||||| || || ||| ||||| || | Sbjct 74588 GCGTCCAGTCC---TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGG 74644 Query 63105 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63164 | | |||||| || | | | ||| || ||||| ||||| || ||||||| Sbjct 74645 CCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGA 74704 Query 63165 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63224 || | | | ||||| |||||| || || | ||| || || | |||| || || |||| Sbjct 74705 ACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGT 74764 Query 63225 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63284 |||| ||||| || | || | |||||||| || |||| | || ||| |||| ||| | Sbjct 74765 TTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGC 74824 Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--TTACTAAT 63342 | || || ||||| || || || | || ||| ||| ||||||||||| | || Sbjct 74825 CGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACAT 74884 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402 || ||||| || || || ||||| || || || | ||||| || | ||||| || Sbjct 74885 TG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTA 74942 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 ||||| || ||||| ||||| |||||| || ||| ||||| ||||| || || Sbjct 74943 AATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTG----CG 74998 Query 63463 ACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 || ||| || ||||| || | ||||| || |||||||| || | || ||| | Sbjct 74999 CCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACA 75058 Query 63519 GTAGATTGTACGTCTCAATAGC---TGAGTCTAT---ATCCCATTGATGAATTCCTACTG 63572 || ||||| || |||| | | | || | | |||| ||| || || | Sbjct 75059 TAAGGTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCA------AATACCCACAG 75112 Query 63573 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63632 | |||||||||| ||||||||| || | ||||||||||||| || | ||| | || | Sbjct 75113 CAACACGCATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGAT 75172 Query 63633 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63692 | || || | || || || ||||| || | ||| ||||| || ||||| | | Sbjct 75173 ACGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGA 75232 Query 63693 TAACCGAGTTGAGTTTATCCTT 63714 | | |||| || | |||||| Sbjct 75233 TGGCAGAGTCCAGCTCATCCTT 75254 Score = 104 bits (114), Expect = 3e-17 Identities = 213/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||||| |||||||| ||||| || | || | | ||||||||| |||||||| Sbjct 73369 TCCTGGTCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATA 73428 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 ||||| || || || || |||| ||| ||| ||||| || || | ||| | Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 |||||| || || || || | ||| || ||| || ||||| || || | ||| ||| Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||||| || || || || | ||| ||||||| || || || | |||||| Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608 Query 62078 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 || |||| | | | | ||||||||||| || || || ||||| | |||||| Sbjct 73609 TCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTC 73668 Query 62135 ATCTCATCATTCCATA 62150 || | ||| ||||| Sbjct 73669 ATATTGTCAGACCATA 73684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625560714800