Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq734 131 1e-25 seq357 111 1e-19 seq160 84.2 2e-11 >seq734 Length=84471 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| |||| || || || | || || || ||||| | | Sbjct 21445 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCG 21386 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||||||||| || || || Sbjct 21385 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21326 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||||||| | ||||| ||||| Sbjct 21325 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTATCCGACTACAAT 21266 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | || || |||||||| |||| || || Sbjct 21265 ATTCAAAAGGAGTCTACTCTTCACTTGGTTTTGCGTCTGCGTGGTGG 21219 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| |||| || || || | || || ||||| || | || Sbjct 21673 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAAGTAGAGTCATCC 21614 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||||||||| || || || Sbjct 21613 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21554 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || || | |||||| ||||||| | ||||| |||||| Sbjct 21553 CAGCGTCTCATTTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAAC 21494 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | |||||||| | || || ||| Sbjct 21493 ATCCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGTCTACGTGGTGGT 21446 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317 || || || ||||| | | |||||| | ||| | |||| || || || |||||| Sbjct 21862 ACCCTCGAGGTGGAGTCTTCGGATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAG 21803 Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 ||||||||||| || || || || ||||| || || || || || ||| | |||||| | Sbjct 21802 GAGGGTATTCCCCCGGACCAGCAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGC 21743 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 |||||| | ||||| ||||| || || |||||||| || | || | |||||||| | Sbjct 21742 CGCACCCTATCCGACTACAATATCCAGAAAGAATCTACTCTTCACCTTGTTTTGCGTCTA 21683 Query 22438 CGCGGAGGT 22446 || || ||| Sbjct 21682 CGTGGTGGT 21674 >seq357 Length=115873 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| || || || | || ||||| ||| | || || || || || Sbjct 6067 GTCAAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAG 6008 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| || |||| || ||||| ||||||||||| ||||| || Sbjct 6007 TCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCG 5948 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || ||||| ||| | |||||| ||||||| | || || Sbjct 5947 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGAC 5888 Query 22393 TACAACATTCAAAA 22406 ||||||||||| || Sbjct 5887 TACAACATTCAGAA 5874 >seq160 Length=36261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || ||||| ||||| Sbjct 3519 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTTGCTGGCAAG 3460 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| |||||| | ||||| |||||||| || || || |||||| Sbjct 3459 CAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACC 3406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723841151345