Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq126 93.3 9e-14
seq379 91.5 3e-13
>seq126
Length=40607
Score = 93.3 bits (102), Expect = 9e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 37835 TCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTCGTG 37894
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
||| ||| ||| | ||| || || || | | |||||| || |||||||| |
Sbjct 37895 GCACGGTAAACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGGTCAGCAACAAACTCAATG 37954
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
|| || |||||| || | |||||| || | | || ||| || | ||||| || |
Sbjct 37955 TATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGACCACAGGGCAGAGCCTCCGTGAGG 38014
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTC 251768
|| ||||| ||| | |||| || ||
Sbjct 38015 AACTCCTTCTCGATCACAACGGCGTC 38040
>seq379
Length=111674
Score = 91.5 bits (100), Expect = 3e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||||||||| |||| ||||| || || || |||| ||||| ||||| |||
Sbjct 95178 GGTGAGGATCTGTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTTAAC 95119
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| || | |||||||| | || || ||||| |||||||||||| |
Sbjct 95118 CAGACCCATCTGCGTCTGAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAATGGTTCC 95059
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||| ||||| |||| ||| | || || || || || |||
Sbjct 95058 GGAAAGTCCACCCTGATGCGTGCCATCAACAACGAACAGGTCGAGGGCTTCCCCAA-GCA 95000
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| || || | ||| || | || ||||||||| | |||||
Sbjct 94999 GTCCGAAGTCAAGACTGTCTTCGTTGAGCACGACCTGGACTC 94958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027826093473733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |