Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq126 93.3 9e-14 seq379 91.5 3e-13 >seq126 Length=40607 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 37835 TCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTCGTG 37894 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| ||| ||| | ||| || || || | | |||||| || |||||||| | Sbjct 37895 GCACGGTAAACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGGTCAGCAACAAACTCAATG 37954 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || |||||| || | |||||| || | | || ||| || | ||||| || | Sbjct 37955 TATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGACCACAGGGCAGAGCCTCCGTGAGG 38014 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTC 251768 || ||||| ||| | |||| || || Sbjct 38015 AACTCCTTCTCGATCACAACGGCGTC 38040 >seq379 Length=111674 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 95178 GGTGAGGATCTGTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTTAAC 95119 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| || | |||||||| | || || ||||| |||||||||||| | Sbjct 95118 CAGACCCATCTGCGTCTGAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAATGGTTCC 95059 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | || || || || || ||| Sbjct 95058 GGAAAGTCCACCCTGATGCGTGCCATCAACAACGAACAGGTCGAGGGCTTCCCCAA-GCA 95000 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || || | ||| || | || ||||||||| | ||||| Sbjct 94999 GTCCGAAGTCAAGACTGTCTTCGTTGAGCACGACCTGGACTC 94958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826093473733