Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq734 159 6e-34 seq160 150 3e-31 seq357 132 9e-26 seq379 127 4e-24 seq126 122 2e-22 >seq734 Length=84471 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || || || ||||| |||||||| || || ||||| ||||| || || Sbjct 21210 TTTTACTGGCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTG 21269 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | ||||| || | |||||| || ||||| ||||| | || ||| Sbjct 21270 TAGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGG 21329 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||| || |||||||| || ||||| | ||||||| || ||||| || | Sbjct 21330 TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAA 21389 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | ||| ||||| ||||| || || ||||||||||| || ||||| Sbjct 21390 GACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | ||| || || ||||| || |||||||| || ||||| Sbjct 21447 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 21506 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || ||||| | || ||||| || ||| Sbjct 21507 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGA 21566 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || ||||| || | ||| |||||| Sbjct 21567 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACT 21626 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| ||||| || || ||||||||||| || ||||| Sbjct 21627 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 >seq160 Length=36261 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || |||||||| || |||||||| || ||||| Sbjct 3377 CCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3436 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | || ||||| || ||| Sbjct 3437 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 3496 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 3497 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 3556 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||| ||||| || ||||| |||||||||||||| Sbjct 3557 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 3594 >seq357 Length=115873 Score = 132 bits (146), Expect = 9e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || || || || | ||||| || | |||||| || ||||| || Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| |||||||| | |||||| ||| Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || ||||| | || || || || | ||| || || || ||||| |||||||||||||| Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 6054 ATCTGCAT 6061 >seq379 Length=111674 Score = 127 bits (140), Expect = 4e-24 Identities = 666/1045 (64%), Gaps = 56/1045 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | || ||| |||||| ||||| ||||| ||| ||||| Sbjct 94169 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTGATCAATGTGGGCAAAAGCG 94228 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || ||| || Sbjct 94229 TGCTGCTTGATGTAGGCGATACGAATGTTCTCGTGCTGGTAGATCTCACCAGTAGTGGGA 94288 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || || ||||| ||||| || || | ||| || ||||||||||| || || Sbjct 94289 ACAAGCTCACCAGTCAGGACATTGATCAGAGTCGACTTACCGGCACCATTGGGACCGATG 94348 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCCA 225220 || |||| ||||| |||| | ||| | | | | | ||| |||| ||| Sbjct 94349 ACAGCAATACGGGACGACAGAGAGCACTGGAAAGTGATATCG--GAA-ATCTGAGGC--- 94402 Query 225221 GTTTGGTAAGCAAAGGCCACGCCACGC--AGCTTCATG---------ATGGCACGGTCCT 225269 |||||| ||| || | || | ||| || ||||| | ||| Sbjct 94403 --TTGGTAGTACCAGGGTACTGGAAGCTCATCTTTGTGGCACGAAGAATGGCCTTGGCCT 94460 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329 ||| | | |||||| ||||| |||||||||||||| | | | || | | | | Sbjct 94461 TGGTCTTTACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAATTCGATCTCAGAGGCAC 94520 Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || |||||||| || |||| ||| | |||| ||||| | | |||||| || Sbjct 94521 CAAGCTCGTAGTAGGACTTAGCCGAGGGGCACTTTTTGACGAACTCGGCCAGGTTACCAC 94580 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | | ||||||| | || |||| || ||||| ||| | ||| || |||| Sbjct 94581 GGTACCGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGTCA 94636 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507 ||||||||||||||||| || || || ||||| | || | | || | | |||| Sbjct 94637 AGGAAGCCAGAGTCGTGAGAAACGATAATGGAAGTGCAAG---GAGAGTTGCAT-AGGTA 94692 Query 225508 CGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566 || | ||||| ||||| | || |||| || || ||||| ||||| ||||||| Sbjct 94693 -GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGATTGGTAGGCTCGTCAAGAAGCA 94751 Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 |||| |||| | | || | ||| || |||| ||||||||| ||||| || || | Sbjct 94752 GGATATCAGGAGCTTCGAAAACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAG 94811 Query 225627 ACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTC 225685 | || | | ||| | ||| | | || | | || ||| ||| |||| ||| | Sbjct 94812 AAAGAGCGGAGATCTCACCAGTAATCATTTGTTCGGTGAAA-CCGAACTCGGTCAGCTGC 94870 Query 225686 TGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCA 225745 | ||| | | ||| | | | | | ||||||| ||||| | || | ||| Sbjct 94871 TTGATGACGTCCTCCTTGGTGGT---ATTG---ACGTTGGCGTCGGCC-AGCT-TCTTCA 94922 Query 225746 TATAC-----------GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACA 225794 || | |||||| || | | | | | ||| | |||||| || ||| | | Sbjct 94923 TAGTCCATTCAATGGTGGTCATCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCAACGAAGA 94982 Query 225795 CCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGA 225854 | ||| || | || | |||||||||||| | ||| | || || ||||| | Sbjct 94983 CAGTCTTGACTTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCACGCA 95042 Query 225855 GCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT-- 225912 |||||| ||| || | || ||||||||| || ||||| | | || ||||| Sbjct 95043 TCAGGGTGGACTTTCCGGAACCATTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTCA 95102 Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972 || | || | | ||| || || ||||||||| |||| |||||||||||||| ||| Sbjct 95103 GACGCAGATGGGTCTGG--TTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAGGTGCA 95160 Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997 | |||||| ||||||||||||||| Sbjct 95161 GTTGCACAGATCCTCACCCTCCTCG 95185 >seq126 Length=40607 Score = 122 bits (134), Expect = 2e-22 Identities = 313/470 (67%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 ||||| ||||||||||| || || || ||| |||||||||| |||||| |||| Sbjct 37802 ACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGC 37861 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG--CGCCAAACTGCTTGGGGTAACCGA 10056 || ||| |||||||||||| ||||||||| || || |||| ||| || || | Sbjct 37862 GAGATGTTCTCCATGAAGTCGAAGGGGTTCGTGGCACGGTAAAC--CTTCTCGTTGCCTA 37919 Query 10057 GTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCA 10116 | || | | ||||||||| || ||||| ||||| || ||||||| || | ||||| Sbjct 37920 GAGCAACAAGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCA 37979 Query 10117 TGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTT 10176 | || | | | ||||| | || || | ||| ||||| ||| | | || || | Sbjct 37980 TTCCCAGTAGACCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGT 38039 Query 10177 CCTCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 | || ||| | | || | ||| ||| | | |||||| || | || || Sbjct 38040 CAGTGATGATCTTTTGCACGAGGTCCTTGCTGGGGC-GGTTGTTC---AGGTGTGAGAAC 38095 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || |||| | ||| || ||||| || ||| || | |||||| || || Sbjct 38096 AGCAGGCAAGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAG 38155 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352 |||||| |||||||| || || ||||||||||||||||| | | ||| | || ||| Sbjct 38156 GTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAG 38215 Query 10353 AACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 || | | || || || ||| | | || || ||||||| ||||||| Sbjct 38216 AAAAAGATGCCTTCGACAGCA-GCGAAAGCTACCAGGCGCTGGGCGAAGG 38264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613034012360