Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq734 159 6e-34
seq160 150 3e-31
seq357 132 9e-26
seq379 127 4e-24
seq126 122 2e-22
>seq734
Length=84471
Score = 159 bits (176), Expect = 6e-34
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285
||||| | || || || || ||||| |||||||| || || ||||| ||||| || ||
Sbjct 21210 TTTTACTGGCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTG 21269
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| ||||| || || | ||||| || | |||||| || ||||| ||||| | || |||
Sbjct 21270 TAGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGG 21329
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || ||||| || |||||||| || ||||| | ||||||| || ||||| || |
Sbjct 21330 TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAA 21389
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || | ||| ||||| ||||| || || ||||||||||| || |||||
Sbjct 21390 GACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | ||| || || ||||| || |||||||| || |||||
Sbjct 21447 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 21506
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| || || || ||||| | || ||||| || |||
Sbjct 21507 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGA 21566
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| || ||||| || | ||| ||||||
Sbjct 21567 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACT 21626
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| ||||| || || ||||||||||| || |||||
Sbjct 21627 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
>seq160
Length=36261
Score = 150 bits (166), Expect = 3e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| || | ||| || |||||||| || |||||||| || |||||
Sbjct 3377 CCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3436
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | || ||||| || |||
Sbjct 3437 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 3496
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 3497 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 3556
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||| ||| ||||| || ||||| ||||||||||||||
Sbjct 3557 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 3594
>seq357
Length=115873
Score = 132 bits (146), Expect = 9e-26
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || || || || || | ||||| || | |||||| || ||||| ||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| |||||||| | |||||| |||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|| ||||| | || || || || | ||| || || || ||||| ||||||||||||||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 6054 ATCTGCAT 6061
>seq379
Length=111674
Score = 127 bits (140), Expect = 4e-24
Identities = 666/1045 (64%), Gaps = 56/1045 (5%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
||||| |||||||||| | || ||| |||||| ||||| ||||| ||| |||||
Sbjct 94169 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTGATCAATGTGGGCAAAAGCG 94228
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | || ||| ||
Sbjct 94229 TGCTGCTTGATGTAGGCGATACGAATGTTCTCGTGCTGGTAGATCTCACCAGTAGTGGGA 94288
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || || ||||| ||||| || || | ||| || ||||||||||| || ||
Sbjct 94289 ACAAGCTCACCAGTCAGGACATTGATCAGAGTCGACTTACCGGCACCATTGGGACCGATG 94348
Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCCA 225220
|| |||| ||||| |||| | ||| | | | | | ||| |||| |||
Sbjct 94349 ACAGCAATACGGGACGACAGAGAGCACTGGAAAGTGATATCG--GAA-ATCTGAGGC--- 94402
Query 225221 GTTTGGTAAGCAAAGGCCACGCCACGC--AGCTTCATG---------ATGGCACGGTCCT 225269
|||||| ||| || | || | ||| || ||||| | |||
Sbjct 94403 --TTGGTAGTACCAGGGTACTGGAAGCTCATCTTTGTGGCACGAAGAATGGCCTTGGCCT 94460
Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329
||| | | |||||| ||||| |||||||||||||| | | | || | | | |
Sbjct 94461 TGGTCTTTACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAATTCGATCTCAGAGGCAC 94520
Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389
|| |||||||| || |||| ||| | |||| ||||| | | |||||| ||
Sbjct 94521 CAAGCTCGTAGTAGGACTTAGCCGAGGGGCACTTTTTGACGAACTCGGCCAGGTTACCAC 94580
Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448
||| | | | ||||||| | || |||| || ||||| ||| | ||| || ||||
Sbjct 94581 GGTACCGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGTCA 94636
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507
||||||||||||||||| || || || ||||| | || | | || | | ||||
Sbjct 94637 AGGAAGCCAGAGTCGTGAGAAACGATAATGGAAGTGCAAG---GAGAGTTGCAT-AGGTA 94692
Query 225508 CGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566
|| | ||||| ||||| | || |||| || || ||||| ||||| |||||||
Sbjct 94693 -GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGATTGGTAGGCTCGTCAAGAAGCA 94751
Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626
|||| |||| | | || | ||| || |||| ||||||||| ||||| || || |
Sbjct 94752 GGATATCAGGAGCTTCGAAAACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAG 94811
Query 225627 ACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTC 225685
| || | | ||| | ||| | | || | | || ||| ||| |||| ||| |
Sbjct 94812 AAAGAGCGGAGATCTCACCAGTAATCATTTGTTCGGTGAAA-CCGAACTCGGTCAGCTGC 94870
Query 225686 TGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCA 225745
| ||| | | ||| | | | | | ||||||| ||||| | || | |||
Sbjct 94871 TTGATGACGTCCTCCTTGGTGGT---ATTG---ACGTTGGCGTCGGCC-AGCT-TCTTCA 94922
Query 225746 TATAC-----------GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACA 225794
|| | |||||| || | | | | | ||| | |||||| || ||| | |
Sbjct 94923 TAGTCCATTCAATGGTGGTCATCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCAACGAAGA 94982
Query 225795 CCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGA 225854
| ||| || | || | |||||||||||| | ||| | || || ||||| |
Sbjct 94983 CAGTCTTGACTTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCACGCA 95042
Query 225855 GCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT-- 225912
|||||| ||| || | || ||||||||| || ||||| | | || |||||
Sbjct 95043 TCAGGGTGGACTTTCCGGAACCATTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTCA 95102
Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972
|| | || | | ||| || || ||||||||| |||| |||||||||||||| |||
Sbjct 95103 GACGCAGATGGGTCTGG--TTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAGGTGCA 95160
Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997
| |||||| |||||||||||||||
Sbjct 95161 GTTGCACAGATCCTCACCCTCCTCG 95185
>seq126
Length=40607
Score = 122 bits (134), Expect = 2e-22
Identities = 313/470 (67%), Gaps = 14/470 (3%)
Strand=Plus/Plus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
||||| ||||||||||| || || || ||| |||||||||| |||||| ||||
Sbjct 37802 ACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGC 37861
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG--CGCCAAACTGCTTGGGGTAACCGA 10056
|| ||| |||||||||||| ||||||||| || || |||| ||| || || |
Sbjct 37862 GAGATGTTCTCCATGAAGTCGAAGGGGTTCGTGGCACGGTAAAC--CTTCTCGTTGCCTA 37919
Query 10057 GTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCA 10116
| || | | ||||||||| || ||||| ||||| || ||||||| || | |||||
Sbjct 37920 GAGCAACAAGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCA 37979
Query 10117 TGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTT 10176
| || | | | ||||| | || || | ||| ||||| ||| | | || || |
Sbjct 37980 TTCCCAGTAGACCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGT 38039
Query 10177 CCTCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232
| || ||| | | || | ||| ||| | | |||||| || | || ||
Sbjct 38040 CAGTGATGATCTTTTGCACGAGGTCCTTGCTGGGGC-GGTTGTTC---AGGTGTGAGAAC 38095
Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292
|| || |||| | ||| || ||||| || ||| || | |||||| || ||
Sbjct 38096 AGCAGGCAAGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAG 38155
Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352
|||||| |||||||| || || ||||||||||||||||| | | ||| | || |||
Sbjct 38156 GTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAG 38215
Query 10353 AACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
|| | | || || || ||| | | || || ||||||| |||||||
Sbjct 38216 AAAAAGATGCCTTCGACAGCA-GCGAAAGCTACCAGGCGCTGGGCGAAGG 38264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921613034012360
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