Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq126 329 6e-85
seq545 138 2e-27
>seq126
Length=40607
Score = 329 bits (364), Expect = 6e-85
Identities = 598/856 (70%), Gaps = 38/856 (4%)
Strand=Plus/Minus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || |||| |||||| || ||||||||||| || |||||||
Sbjct 38649 ATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 38590
Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAAAAACATACT 42424
|| |||| | || | |||| | |||| ||| ||| || |||| ||
Sbjct 38589 CTCCACGACTGGAACA-ACCGCCTGAACAAGGACGAGCAGTACTTCATCTCCCACATTCT 38531
Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484
|||||||||||||||||||| ||||| ||||| || ||||| | | ||| |
Sbjct 38530 TGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCGCTTCTCGGG 38471
Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544
||||| ||| | ||||| |||||||||||||| |||||||| || || ||| |
Sbjct 38470 CGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATGGAAAACAT 38411
Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604
|||||||| ||| | ||| || |||| |||||| ||| || |||| |
Sbjct 38410 TCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGAGCCATCACAGCGCAC 38351
Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664
|||||||| || || || || || ||||||||| ||||| |||||||| ||
Sbjct 38350 ATACCTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCT 38291
Query 42665 CAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723
|| |||||| | | | | | | || |||| | || | |||||||| || | || |
Sbjct 38290 GAAGTGGATC-ACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAGCTTTCGCTGCTG 38232
Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT---CAAGCAGAAGG 42780
|||| |||||||| |||||||| || |||||||| || |||||||| ||||| ||
Sbjct 38231 TCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGCGCAAGCGT--GG 38174
Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840
| || ||||| || || |||||||| ||||| || || | | || ||||| ||||| |
Sbjct 38173 TCTC-ATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGGGTCTGCACA 38115
Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCCTCG-AAGGAGC 42897
|||||||| ||||| |||||||| ||||| | |||| |||| | ||||| |
Sbjct 38114 CCGACTTTGCTTGCCTGCTGTTCTCA---CACCTGA---ACAACCGCCCCAGCAAGGACC 38061
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957
|| | |||||||| || ||||| | |||||||||||||||||||||| || | |
Sbjct 38060 TCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTC 38001
Query 42958 TGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAGTACGT 43015
||||| ||| || | || |||||| ||| || ||| |||| ||||| ||| ||
Sbjct 38000 TGCCCTGTG-GTCTACTGGGAATGAACGCCGATCTGATGAAGCAA-TACATTGAGTTTGT 37943
Query 43016 CGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACGCCGTG 43069
|| |||| || || || | | ||| || || | ||| | ||
Sbjct 37942 TGCTGACCGCCTGCT-TG-----TTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAA 37889
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
|||||||||||| ||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct 37888 CCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCG 37829
Query 43130 CGTCGCCGACTACCAG 43145
|||| |||||||||
Sbjct 37828 TGTCGGTGACTACCAG 37813
>seq545
Length=97716
Score = 138 bits (152), Expect = 2e-27
Identities = 961/1537 (63%), Gaps = 53/1537 (3%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || |||||||||||||||| |||| || ||
Sbjct 73719 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGG 73778
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
|| | || ||| ||||||| || ||||| | ||||| || || |||||||| | ||
Sbjct 73779 TTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAAC 73838
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC----AGT 244265
|| ||| || | || || ||| || | ||| ||| ||| |||
Sbjct 73839 GAGAAGAGAATTGCGTACACCATGC-------TGTTTAATCTT--CTCCTTCAGAGAAGT 73889
Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325
|| | || | ||||| | | | | ||||||| ||||||||||| | || |
Sbjct 73890 CCAAT----CCCACAGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTT 73945
Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385
| ||| || ||||| ||||| | ||| | ||| ||| |||||| | || || |
Sbjct 73946 GGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGAT-TTCCATC 74004
Query 244386 TCTC--GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443
||| || || |||| ||||||||| || || || |||||| | | || ||
Sbjct 74005 GAAGCAGTC-AGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTGC 74063
Query 244444 CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503
| | | || || |||| | | |||| |||| ||||| |||||||| ||
Sbjct 74064 TTCAGGGGACTCAAAAGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACC 74123
Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563
| ||| ||||| | || ||| ||||| | ||||| | || || || |||
Sbjct 74124 AACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTT 74183
Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623
| || || | ||| ||||| || | | || ||| ||| ||| |
Sbjct 74184 CACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTT 74243
Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683
|||||| ||||| | ||| | | || ||| || || |||||||
Sbjct 74244 AAAGTCATACTC------ACCCTTG----TTGTAGTCC--ACGAAGGAAGGAAGGGCGAG 74291
Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743
|| |||||||| || || ||||| || | | |||| | |||||| |||||
Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351
Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803
|||||| || ||||| || || | | |||||| |||| ||||||| |||
Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411
Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863
||||| |||||||| || || || || |||||| | || | | | ||| ||
Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAG 74471
Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923
| | |||||||| | ||||| | ||||| ||| || ||||| ||
Sbjct 74472 CTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTCATACAGAGC 74531
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983
||| ||||| ||| || || | | ||| ||||| ||||||||||| |
Sbjct 74532 CTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGAGCGT 74591
Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043
||| || | | || || | || |||||| ||||| ||||||||||||| ||
Sbjct 74592 CCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAA 74651
Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103
||||| | | | || ||| || |||||| | || || | || |||||
Sbjct 74652 TAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAA 74711
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
||| || | ||||| ||||| | ||| | ||| | ||| ||||| |||||||| || ||
Sbjct 74712 GACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCACC 74771
Query 245164 CTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219
||||| || | | || ||| |||||| | ||||| | || || |||||||
Sbjct 74772 CTGGT----CAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGT 74827
Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC--TGAGGTTGCTGATGGA 245277
| || ||||| ||||| ||||||| ||| || | | | | || || ||
Sbjct 74828 TCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGA 74887
Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337
| || | || ||||| |||||| || | |||||| |||||| ||| || ||
Sbjct 74888 GA--CCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAAT 74945
Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397
||| || || ||||| ||||||| | || || || || |||| ||| | || |||
Sbjct 74946 GCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGG 75005
Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCC 245457
| | | ||||| || || || ||||| || ||| | ||| || | |
Sbjct 75006 AGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTT 75065
Query 245458 GTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGA 245516
||| || | |||| ||| |||| ||||| || || || || | ||| |
Sbjct 75066 GTAGGTTTCAAGCA-CGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCATTA 75124
Query 245517 GGGTGTGCTGGGG-CGT--CTCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCT 245573
|||||||||| ||| |||| || || || ||||||| || || ||||
Sbjct 75125 TCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGT---TTGAGCAGATACGAACGCT 75181
Query 245574 CGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610
||||||||||||| ||||||||| |||| |||||
Sbjct 75182 CGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 75218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944329603152880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |