Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq126 329 6e-85 seq545 138 2e-27 >seq126 Length=40607 Score = 329 bits (364), Expect = 6e-85 Identities = 598/856 (70%), Gaps = 38/856 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || |||| |||||| || ||||||||||| || ||||||| Sbjct 38649 ATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 38590 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAAAAACATACT 42424 || |||| | || | |||| | |||| ||| ||| || |||| || Sbjct 38589 CTCCACGACTGGAACA-ACCGCCTGAACAAGGACGAGCAGTACTTCATCTCCCACATTCT 38531 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 |||||||||||||||||||| ||||| ||||| || ||||| | | ||| | Sbjct 38530 TGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCGCTTCTCGGG 38471 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| | ||||| |||||||||||||| |||||||| || || ||| | Sbjct 38470 CGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATGGAAAACAT 38411 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 |||||||| ||| | ||| || |||| |||||| ||| || |||| | Sbjct 38410 TCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGAGCCATCACAGCGCAC 38351 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 |||||||| || || || || || ||||||||| ||||| |||||||| || Sbjct 38350 ATACCTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCT 38291 Query 42665 CAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| | | | | | | || |||| | || | |||||||| || | || | Sbjct 38290 GAAGTGGATC-ACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAGCTTTCGCTGCTG 38232 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT---CAAGCAGAAGG 42780 |||| |||||||| |||||||| || |||||||| || |||||||| ||||| || Sbjct 38231 TCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGCGCAAGCGT--GG 38174 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || || |||||||| ||||| || || | | || ||||| ||||| | Sbjct 38173 TCTC-ATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGGGTCTGCACA 38115 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCCTCG-AAGGAGC 42897 |||||||| ||||| |||||||| ||||| | |||| |||| | ||||| | Sbjct 38114 CCGACTTTGCTTGCCTGCTGTTCTCA---CACCTGA---ACAACCGCCCCAGCAAGGACC 38061 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 || | |||||||| || ||||| | |||||||||||||||||||||| || | | Sbjct 38060 TCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTC 38001 Query 42958 TGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAGTACGT 43015 ||||| ||| || | || |||||| ||| || ||| |||| ||||| ||| || Sbjct 38000 TGCCCTGTG-GTCTACTGGGAATGAACGCCGATCTGATGAAGCAA-TACATTGAGTTTGT 37943 Query 43016 CGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACGCCGTG 43069 || |||| || || || | | ||| || || | ||| | || Sbjct 37942 TGCTGACCGCCTGCT-TG-----TTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAA 37889 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| ||||||||||||||| | | |||||||||||||| || |||||||| Sbjct 37888 CCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCG 37829 Query 43130 CGTCGCCGACTACCAG 43145 |||| ||||||||| Sbjct 37828 TGTCGGTGACTACCAG 37813 >seq545 Length=97716 Score = 138 bits (152), Expect = 2e-27 Identities = 961/1537 (63%), Gaps = 53/1537 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || |||||||||||||||| |||| || || Sbjct 73719 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGG 73778 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 || | || ||| ||||||| || ||||| | ||||| || || |||||||| | || Sbjct 73779 TTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAAC 73838 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC----AGT 244265 || ||| || | || || ||| || | ||| ||| ||| ||| Sbjct 73839 GAGAAGAGAATTGCGTACACCATGC-------TGTTTAATCTT--CTCCTTCAGAGAAGT 73889 Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 || | || | ||||| | | | | ||||||| ||||||||||| | || | Sbjct 73890 CCAAT----CCCACAGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTT 73945 Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 | ||| || ||||| ||||| | ||| | ||| ||| |||||| | || || | Sbjct 73946 GGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGAT-TTCCATC 74004 Query 244386 TCTC--GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443 ||| || || |||| ||||||||| || || || |||||| | | || || Sbjct 74005 GAAGCAGTC-AGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTGC 74063 Query 244444 CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | | | || || |||| | | |||| |||| ||||| |||||||| || Sbjct 74064 TTCAGGGGACTCAAAAGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACC 74123 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | ||| ||||| | || ||| ||||| | ||||| | || || || ||| Sbjct 74124 AACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTT 74183 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | || || | ||| ||||| || | | || ||| ||| ||| | Sbjct 74184 CACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTT 74243 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||| ||||| | ||| | | || ||| || || ||||||| Sbjct 74244 AAAGTCATACTC------ACCCTTG----TTGTAGTCC--ACGAAGGAAGGAAGGGCGAG 74291 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 || |||||||| || || ||||| || | | |||| | |||||| ||||| Sbjct 74292 AGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCA 74351 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||||| || ||||| || || | | |||||| |||| ||||||| ||| Sbjct 74352 TAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 74411 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||| |||||||| || || || || |||||| | || | | | ||| || Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAG 74471 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| | ||||| | ||||| ||| || ||||| || Sbjct 74472 CTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTCATACAGAGC 74531 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||| ||||| ||| || || | | ||| ||||| ||||||||||| | Sbjct 74532 CTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGAGCGT 74591 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || | | || || | || |||||| ||||| ||||||||||||| || Sbjct 74592 CCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAA 74651 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | | | || ||| || |||||| | || || | || ||||| Sbjct 74652 TAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAA 74711 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || | ||||| ||||| | ||| | ||| | ||| ||||| |||||||| || || Sbjct 74712 GACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCACC 74771 Query 245164 CTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| || | | || ||| |||||| | ||||| | || || ||||||| Sbjct 74772 CTGGT----CAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGT 74827 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC--TGAGGTTGCTGATGGA 245277 | || ||||| ||||| ||||||| ||| || | | | | || || || Sbjct 74828 TCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGA 74887 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 | || | || ||||| |||||| || | |||||| |||||| ||| || || Sbjct 74888 GA--CCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAAT 74945 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||| || || ||||| ||||||| | || || || || |||| ||| | || ||| Sbjct 74946 GCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGG 75005 Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCC 245457 | | | ||||| || || || ||||| || ||| | ||| || | | Sbjct 75006 AGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTT 75065 Query 245458 GTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGA 245516 ||| || | |||| ||| |||| ||||| || || || || | ||| | Sbjct 75066 GTAGGTTTCAAGCA-CGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCATTA 75124 Query 245517 GGGTGTGCTGGGG-CGT--CTCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCT 245573 |||||||||| ||| |||| || || || ||||||| || || |||| Sbjct 75125 TCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGT---TTGAGCAGATACGAACGCT 75181 Query 245574 CGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 ||||||||||||| ||||||||| |||| ||||| Sbjct 75182 CGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 75218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944329603152880