Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq734 116 9e-21
seq357 87.8 4e-12
>seq734
Length=84471
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || ||||| || || || | ||| ||||| || ||
Sbjct 21483 TCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAA 21542
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| || || ||| || || || || |||||||| || | || |||
Sbjct 21543 ATGAGACGCTGCTGG---TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACG 21599
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| || ||||||||||| || || ||||| || || |||||||||
Sbjct 21600 TTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTG 21659
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 21660 ACGAAGATTTGCAT 21673
Score = 107 bits (118), Expect = 5e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| ||||| ||||||| || ||||| || || || | || ||||| |||||
Sbjct 21255 TCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 21314
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| || || ||| || || || || |||||||| || | || |||
Sbjct 21315 ATGAGACGCTGCTGG---TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACG 21371
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| || || || ||||| || || ||||| || || |||||||||
Sbjct 21372 TTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTG 21431
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 21432 ACGAAGATTTGCAT 21445
>seq357
Length=115873
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||| | || ||||| || || || | || || || |||||||||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| ||||| || || || || || || ||||| || || | || || || ||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465
|||| || || || || ||||| || |||||||| || || || |||||||||||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 288466 ATCTGCAT 288473
||||||||
Sbjct 6054 ATCTGCAT 6061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179642112056214
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |