Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq734 116 9e-21 seq357 87.8 4e-12 >seq734 Length=84471 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | ||| ||||| || || Sbjct 21483 TCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAA 21542 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || || ||| || || || || |||||||| || | || ||| Sbjct 21543 ATGAGACGCTGCTGG---TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACG 21599 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| || ||||||||||| || || ||||| || || ||||||||| Sbjct 21600 TTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTG 21659 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 21660 ACGAAGATTTGCAT 21673 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| ||||||| || ||||| || || || | || ||||| ||||| Sbjct 21255 TCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 21314 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || || ||| || || || || |||||||| || | || ||| Sbjct 21315 ATGAGACGCTGCTGG---TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACG 21371 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || ||||| || || ||||| || || ||||||||| Sbjct 21372 TTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTG 21431 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 21432 ACGAAGATTTGCAT 21445 >seq357 Length=115873 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||| | || ||||| || || || | || || || ||||||||| Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || || || || || || ||||| || || | || || || || Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 |||| || || || || ||||| || |||||||| || || || ||||||||||| Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 6054 ATCTGCAT 6061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642112056214