Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq545 140 4e-28 seq126 131 2e-25 >seq545 Length=97716 Score = 140 bits (154), Expect = 4e-28 Identities = 648/1016 (64%), Gaps = 18/1016 (2%) Strand=Plus/Plus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974 ||||| || || || ||| | | | ||||| |||| |||||| || |||||||||||| Sbjct 73732 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCA 73791 Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 114034 ||||| || | || || | ||| |||||| ||||||||||| | |||||| || Sbjct 73792 TTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTG 73851 Query 114035 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTG 114092 || | ||| | | |||| ||||| || | ||| || | | | | || | Sbjct 73852 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGG 73910 Query 114093 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATG 114152 || | | ||||||||||||||| ||||| ||||||||| | || || |||||| | | Sbjct 73911 AGTCACA-TCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGG 73969 Query 114153 TCTCGTATGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGA 114208 | ||| | ||||| || || | ||| | ||| | || || ||||| Sbjct 73970 TTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTC----AGTGCAGCGTGG 74025 Query 114209 TACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAG 114267 || || || ||||| || | || | || | || | || ||| ||||| | | Sbjct 74026 TAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTG-CTTCAGGGGACTCAAAAGGCAT 74084 Query 114268 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 114327 || || || | || || ||||| || ||||| | |||||| || ||||| | Sbjct 74085 GCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCG 74144 Query 114328 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 114387 ||| || || |||| || || ||||| ||| ||| || | | || || Sbjct 74145 CATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204 Query 114388 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 114447 ||| ||||||| |||| ||| || ||||||| | ||| | | | | Sbjct 74205 GTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTT 74264 Query 114448 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 114507 | | || | ||||||||||| || || || || ||||||| | |||||| Sbjct 74265 GTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG 74324 Query 114508 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 114567 || ||||| ||||| || || || | || || || |||||| || | || || Sbjct 74325 GGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTT 74384 Query 114568 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 114627 ||||| ||| ||| || || |||||||||||| | || | || || || || Sbjct 74385 CTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGT 74444 Query 114628 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 114686 |||| | ||||| || | ||| | | || | | || | ||| | | || | Sbjct 74445 CTGGGCTTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGAC 74503 Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 114746 |||||| ||| |||||| || || || ||||||||||| || | |||| | | Sbjct 74504 CCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGC 74563 Query 114747 CTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 |||| || || || ||||| | ||| | ||| | || || |||||||||||||||| Sbjct 74564 CTGG-GCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATG 74622 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 || ||||| ||||||||| || | || || || ||| || ||||||| | || Sbjct 74623 AACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCG 74682 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921 || || || | || | || || | || ||| || ||||| || || ||||| Sbjct 74683 TGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTA 74738 >seq126 Length=40607 Score = 131 bits (144), Expect = 2e-25 Identities = 346/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| |||||||| |||||||| || || || || |||||| ||| || Sbjct 38105 GCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCA 38164 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| ||||| || ||||||||| | || | ||||||||| ||||| Sbjct 38165 GGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATG 38224 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTCA 126223 || || ||| ||||| || | || |||| || |||| ||||| |||| | Sbjct 38225 CCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG---TCGACTCCTTGTCGGTG 38281 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 | |||||||| ||||| | ||||| ||| || || | || | || || | Sbjct 38282 ATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTG 38341 Query 126284 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 126343 || || | | | |||||| || |||||||| | || || || || || ||| Sbjct 38342 AACAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTT 38401 Query 126344 TCGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 126402 || ||| | ||| ||| || | ||| | ||||||| |||| || ||| || Sbjct 38402 TCAGAGTGAATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGAT 38460 Query 126403 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 126462 ||| ||||| | | || | | || || || ||||| ||||| || | || Sbjct 38461 CTGAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGC 38520 Query 126463 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCA 126519 || || || || || | ||||| | ||| || | || ||||| || | ||||| Sbjct 38521 GAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCA 38580 Query 126520 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 ||||| |||||||| |||||||| | |||||| |||||||| Sbjct 38581 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347529394040