Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq545 140 4e-28
seq126 131 2e-25
>seq545
Length=97716
Score = 140 bits (154), Expect = 4e-28
Identities = 648/1016 (64%), Gaps = 18/1016 (2%)
Strand=Plus/Plus
Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974
||||| || || || ||| | | | ||||| |||| |||||| || ||||||||||||
Sbjct 73732 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCA 73791
Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 114034
||||| || | || || | ||| |||||| ||||||||||| | |||||| ||
Sbjct 73792 TTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTG 73851
Query 114035 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTG 114092
|| | ||| | | |||| ||||| || | ||| || | | | | || |
Sbjct 73852 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGG 73910
Query 114093 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATG 114152
|| | | ||||||||||||||| ||||| ||||||||| | || || |||||| | |
Sbjct 73911 AGTCACA-TCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGG 73969
Query 114153 TCTCGTATGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGA 114208
| ||| | ||||| || || | ||| | ||| | || || |||||
Sbjct 73970 TTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTC----AGTGCAGCGTGG 74025
Query 114209 TACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAG 114267
|| || || ||||| || | || | || | || | || ||| ||||| | |
Sbjct 74026 TAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTG-CTTCAGGGGACTCAAAAGGCAT 74084
Query 114268 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 114327
|| || || | || || ||||| || ||||| | |||||| || ||||| |
Sbjct 74085 GCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCG 74144
Query 114328 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 114387
||| || || |||| || || ||||| ||| ||| || | | || ||
Sbjct 74145 CATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204
Query 114388 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 114447
||| ||||||| |||| ||| || ||||||| | ||| | | | |
Sbjct 74205 GTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTT 74264
Query 114448 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 114507
| | || | ||||||||||| || || || || ||||||| | ||||||
Sbjct 74265 GTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG 74324
Query 114508 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 114567
|| ||||| ||||| || || || | || || || |||||| || | || ||
Sbjct 74325 GGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTT 74384
Query 114568 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 114627
||||| ||| ||| || || |||||||||||| | || | || || || ||
Sbjct 74385 CTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGT 74444
Query 114628 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 114686
|||| | ||||| || | ||| | | || | | || | ||| | | || |
Sbjct 74445 CTGGGCTTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGAC 74503
Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 114746
|||||| ||| |||||| || || || ||||||||||| || | |||| | |
Sbjct 74504 CCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGC 74563
Query 114747 CTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805
|||| || || || ||||| | ||| | ||| | || || ||||||||||||||||
Sbjct 74564 CTGG-GCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATG 74622
Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865
|| ||||| ||||||||| || | || || || ||| || ||||||| | ||
Sbjct 74623 AACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCG 74682
Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921
|| || || | || | || || | || ||| || ||||| || || |||||
Sbjct 74683 TGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTA 74738
>seq126
Length=40607
Score = 131 bits (144), Expect = 2e-25
Identities = 346/522 (66%), Gaps = 11/522 (2%)
Strand=Plus/Plus
Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106
||||| || ||| |||||||| |||||||| || || || || |||||| ||| ||
Sbjct 38105 GCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCA 38164
Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166
||||||||||| ||||| || ||||||||| | || | ||||||||| |||||
Sbjct 38165 GGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATG 38224
Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTCA 126223
|| || ||| ||||| || | || |||| || |||| ||||| |||| |
Sbjct 38225 CCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG---TCGACTCCTTGTCGGTG 38281
Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283
| |||||||| ||||| | ||||| ||| || || | || | || || |
Sbjct 38282 ATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTG 38341
Query 126284 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 126343
|| || | | | |||||| || |||||||| | || || || || || |||
Sbjct 38342 AACAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTT 38401
Query 126344 TCGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 126402
|| ||| | ||| ||| || | ||| | ||||||| |||| || ||| ||
Sbjct 38402 TCAGAGTGAATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGAT 38460
Query 126403 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 126462
||| ||||| | | || | | || || || ||||| ||||| || | ||
Sbjct 38461 CTGAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGC 38520
Query 126463 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCA 126519
|| || || || || | ||||| | ||| || | || ||||| || | |||||
Sbjct 38521 GAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCA 38580
Query 126520 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561
||||| |||||||| |||||||| | |||||| ||||||||
Sbjct 38581 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597347529394040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |