Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq734 123 3e-23 seq357 96.9 4e-15 seq160 87.8 2e-12 >seq734 Length=84471 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || |||||||||||||||||| || | || || || | Sbjct 21230 ACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCC 21289 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | | |||||| Sbjct 21290 ATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTT 21349 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | || || || ||||| |||| || | Sbjct 21350 GTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAA 21408 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| ||||| || ||||||||||| Sbjct 21409 TGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || |||||| || | || | || |||||| || || ||||| || | Sbjct 21446 ACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 21505 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || ||||| ||||| || ||||| ||||||||||| | || Sbjct 21506 TAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGG 21565 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| || |||| ||| | | | || ||| || || | Sbjct 21566 AATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCGGATGACTCTA 21624 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || ||||| || || ||||| ||||| || ||||||||||| Sbjct 21625 CTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 >seq357 Length=115873 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||| ||||| |||| ||| || || | || || |||||||| |||||||| | Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 5990 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || |||| || || || || ||||| || ||||| || Sbjct 5991 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 6050 Query 42198 AAGATTTGCATTTTCAC 42214 || || ||||| || || Sbjct 6051 AAAATCTGCATCTTGAC 6067 >seq160 Length=36261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||||| || | || | ||| |||||| || || ||||| || | Sbjct 3376 ACCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3435 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| ||||| || || | ||||||||||| | || Sbjct 3436 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 3495 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| || |||| ||| | | | |||||| || || | Sbjct 3496 AATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCCGAAGACTCGA 3554 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 | || | || ||||| || ||||| || ||||| || || Sbjct 3555 CCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 3594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207279599920