Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq545 138 1e-27
>seq545
Length=97716
Score = 138 bits (152), Expect = 1e-27
Identities = 478/736 (65%), Gaps = 10/736 (1%)
Strand=Plus/Minus
Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-GATGAC 93956
|| || || ||||| || || || || | | ||| ||||||| |||||||| | ||||
Sbjct 75029 CCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCATGTTTCCTAGTTGAC 74970
Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016
| || | ||| ||| || |||| ||| | ||||||| || || | || ||
Sbjct 74969 -ATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACTTGCGCCATGATTTC 74911
Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074
|| || || || ||||| ||| ||| ||| |||| ||||||| || ||||||
Sbjct 74910 CAAGATGGCCGGTGGTATCGGTCTCAATGTTCAC--CGTATTCGTGCCACTGGCTCCTAC 74853
Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134
|| || || || || || || |||||| | || || ||||| || || |||||||||
Sbjct 74852 ATTGCTGGCACTAACGGTACTTCGAACGGCATTGTTCCCATGCTGCGTGTTTTCAACAAC 74793
Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194
| || || || || ||||||||||| | | | || | || || | || |||
Sbjct 74792 ACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCCGGAGCCTTTGCTATTTACCTC 74733
Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254
||||| ||||| || || || | ||| ||||||| || ||||||||||| || ||
Sbjct 74732 GAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCAAGAACCACGGAAAGGAA 74673
Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314
| | || | ||||| || | || |||||| | ||||| || ||||| ||
Sbjct 74672 GAAGTCCGTGCTCGTGACCTATTTTTGGCCCTCTGGATCTGTGACCTGTTCATGAAGCGT 74613
Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374
|| ||||| || | ||||| || | || ||||||||||| || || || | |||
Sbjct 74612 GTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAATGCCCAGGCTTGGCAGAC 74553
Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCAG 94433
| ||| ||||| | |||||| || || | |||| | || | |
Sbjct 74552 TGCTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTATGAGAAGGAGGGTCGCGGTC-G 74494
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
| |||| | | || |||||||||| || || |||| | ||| || || ||
Sbjct 74493 CATGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAAGCCCAGACTGAAACTGG 74434
Query 94494 TACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552
| || | ||| | | ||| || | ||| |||| |||| ||| ||| | | || |
Sbjct 74433 CAACCCTTTCATGCTTTACAAAGACCACTG-CAACCGCAAGAGCAATCAGAAAAATCTAG 74375
Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612
| || ||||| || || ||||| |||||| | |||||| | | || || |||
Sbjct 74374 GTACCATTCGCAGCTCTAACCTATGCACTGAGATTATTGAGTATTGTGCCCCTGATGAGG 74315
Query 94613 TTGCTGTGTGTAACCT 94628
| |||||||| |||||
Sbjct 74314 TCGCTGTGTGCAACCT 74299
Score = 114 bits (126), Expect = 1e-20
Identities = 197/282 (70%), Gaps = 8/282 (3%)
Strand=Plus/Minus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || || || |||||||| || ||| ||| | ||||| ||||||||||| ||||
Sbjct 73844 CTTCTCGTTGCACCCATGCCTACAGCCAGCACATCACAGATTCTTGGCAACAATGAGTGC 73785
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
|| ||||||| ||| |||||| | ||| | | || || || || || || |||| |||
Sbjct 73784 TTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 73725
Query 95215 ATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCA 95272
||||| || ||||| |||||| ||| ||| ||| | ||| |||||| | |
Sbjct 73724 GTCAACCCCTGGCTTCTACGTGACCTG--GTCGATCTTGGTCTATGGTCTGACAATATGA 73667
Query 95273 AGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACA--TCCCGCAAATACCGGAGGA 95330
|||| | | | || |||||||||| | ||||||| ||| || || || ||
Sbjct 73666 AGAATCGCATTATTGCCGACAACGGCTCCATTCAGAACATTTCCAGC--ATTCCTCCTGA 73609
Query 95331 CATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
|| || || || |||||||| || |||||||| | |||||
Sbjct 73608 TATTAAAGCTCTGTACAAGACGGTTTGGGAGATTTCCCAGCG 73567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494718172375480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |