Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq545 138 1e-27 >seq545 Length=97716 Score = 138 bits (152), Expect = 1e-27 Identities = 478/736 (65%), Gaps = 10/736 (1%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-GATGAC 93956 || || || ||||| || || || || | | ||| ||||||| |||||||| | |||| Sbjct 75029 CCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCATGTTTCCTAGTTGAC 74970 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | || | ||| ||| || |||| ||| | ||||||| || || | || || Sbjct 74969 -ATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACTTGCGCCATGATTTC 74911 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || ||||| ||| ||| ||| |||| ||||||| || |||||| Sbjct 74910 CAAGATGGCCGGTGGTATCGGTCTCAATGTTCAC--CGTATTCGTGCCACTGGCTCCTAC 74853 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || || || || || || |||||| | || || ||||| || || ||||||||| Sbjct 74852 ATTGCTGGCACTAACGGTACTTCGAACGGCATTGTTCCCATGCTGCGTGTTTTCAACAAC 74793 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || || || ||||||||||| | | | || | || || | || ||| Sbjct 74792 ACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCCGGAGCCTTTGCTATTTACCTC 74733 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| ||||| || || || | ||| ||||||| || ||||||||||| || || Sbjct 74732 GAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCAAGAACCACGGAAAGGAA 74673 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 | | || | ||||| || | || |||||| | ||||| || ||||| || Sbjct 74672 GAAGTCCGTGCTCGTGACCTATTTTTGGCCCTCTGGATCTGTGACCTGTTCATGAAGCGT 74613 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || ||||| || | ||||| || | || ||||||||||| || || || | ||| Sbjct 74612 GTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAATGCCCAGGCTTGGCAGAC 74553 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCAG 94433 | ||| ||||| | |||||| || || | |||| | || | | Sbjct 74552 TGCTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTATGAGAAGGAGGGTCGCGGTC-G 74494 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | |||| | | || |||||||||| || || |||| | ||| || || || Sbjct 74493 CATGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAAGCCCAGACTGAAACTGG 74434 Query 94494 TACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | || | ||| | | ||| || | ||| |||| |||| ||| ||| | | || | Sbjct 74433 CAACCCTTTCATGCTTTACAAAGACCACTG-CAACCGCAAGAGCAATCAGAAAAATCTAG 74375 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | || ||||| || || ||||| |||||| | |||||| | | || || ||| Sbjct 74374 GTACCATTCGCAGCTCTAACCTATGCACTGAGATTATTGAGTATTGTGCCCCTGATGAGG 74315 Query 94613 TTGCTGTGTGTAACCT 94628 | |||||||| ||||| Sbjct 74314 TCGCTGTGTGCAACCT 74299 Score = 114 bits (126), Expect = 1e-20 Identities = 197/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || || || |||||||| || ||| ||| | ||||| ||||||||||| |||| Sbjct 73844 CTTCTCGTTGCACCCATGCCTACAGCCAGCACATCACAGATTCTTGGCAACAATGAGTGC 73785 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 || ||||||| ||| |||||| | ||| | | || || || || || || |||| ||| Sbjct 73784 TTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 73725 Query 95215 ATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCA 95272 ||||| || ||||| |||||| ||| ||| ||| | ||| |||||| | | Sbjct 73724 GTCAACCCCTGGCTTCTACGTGACCTG--GTCGATCTTGGTCTATGGTCTGACAATATGA 73667 Query 95273 AGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACA--TCCCGCAAATACCGGAGGA 95330 |||| | | | || |||||||||| | ||||||| ||| || || || || Sbjct 73666 AGAATCGCATTATTGCCGACAACGGCTCCATTCAGAACATTTCCAGC--ATTCCTCCTGA 73609 Query 95331 CATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || || || |||||||| || |||||||| | ||||| Sbjct 73608 TATTAAAGCTCTGTACAAGACGGTTTGGGAGATTTCCCAGCG 73567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718172375480