Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq126 134 1e-26
seq734 129 6e-25
seq160 114 1e-20
seq357 109 5e-19
>seq126
Length=40607
Score = 134 bits (148), Expect = 1e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414
|| ||||| | || |||| |||||| || | |||||||||||| | || |||||
Sbjct 38040 GACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGTGGTCTACTGGGA 37981
Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474
|||||||| || |||||| | ||||| || ||||| || ||||||||||| |||
Sbjct 37980 ATGAACGCCGATCTGATGAAGCAATACATTGAGTTTGTTGCTGACCGCCTGCTTGTTGCT 37921
Query 47475 CTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCG 47534
||| | ||| |||||| || ||| || ||||| || ||| | ||||| |||
Sbjct 37920 CTAGGCAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGACTTCATGGAGAACATCTCG 37861
Query 47535 CTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| |||||||||||||| || |||||||| ||||| || ||
Sbjct 37860 CTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 37817
>seq734
Length=84471
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| ||||| || | |||||||| |||||||||||||| |||
Sbjct 21219 CCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGAT 21278
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||||||| | || | |||||||| || || ||
Sbjct 21279 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21338
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | ||| |||| | ||| ||
Sbjct 21339 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTATCCGAAGACTCCAC 21397
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || || || ||||| || || || || |||||
Sbjct 21398 CTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 107 bits (118), Expect = 2e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| ||||| || | || | ||||| ||||| || |||||||| |||
Sbjct 21675 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGAT 21734
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||||||| | || | |||||||| || || ||
Sbjct 21735 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21794
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | ||| |||| | ||| ||
Sbjct 21795 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTATCCGAAGACTCCAC 21853
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091
|||| ||| | || ||||| ||||
Sbjct 21854 CTCGAGGGTAATGGTCTTGCCAGTCA 21879
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| ||||| || | || | |||||||| || || || ||||| |||
Sbjct 21447 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 21506
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || |||||||| | || | |||||||| || || ||
Sbjct 21507 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGA 21566
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | ||| || | ||| ||
Sbjct 21567 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTATCGGATGACTCTAC 21625
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| ||| | || || || || ||||| || || || || |||||
Sbjct 21626 TTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
>seq160
Length=36261
Score = 114 bits (126), Expect = 1e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| |||| || | || | || ||||| || || || ||||| ||| |
Sbjct 3377 CCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3436
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| ||||||| |||||||| || || ||
Sbjct 3437 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 3496
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| ||||||| | ||||||
Sbjct 3497 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAAGACTCGAC 3555
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| | ||| | || || || ||||| || || || |||
Sbjct 3556 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595
>seq357
Length=115873
Score = 109 bits (120), Expect = 5e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| || || ||||| ||| || ||||| || |||||| |||||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || ||||| ||||||||||||||| || || ||||| | |||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| ||| || |||| ||| | ||| || || || || || || || |||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 6054 ATCTGCAT 6061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475495967723120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |