Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq545 140 4e-28
seq126 131 2e-25
>seq545
Length=97716
Score = 140 bits (154), Expect = 4e-28
Identities = 651/1017 (64%), Gaps = 20/1017 (2%)
Strand=Plus/Plus
Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935
||||| || || || ||| | | | |||||||||| |||||| || ||||||||||||
Sbjct 73732 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCA 73791
Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
||||| || | || || | |||| |||||| ||||||||||| | |||||| |||
Sbjct 73792 TTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTG 73851
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAG-GGCGTCCCA-GTCGTAGTTGAGCTTTG 116053
|| | ||| | |||| ||||| || | |||| | | || | | || |
Sbjct 73852 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGG 73910
Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113
| | | ||||||||||||||||| ||||| |||||||| | || || |||||| | |
Sbjct 73911 AGT-CACATCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGG 73969
Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAAT----TCGGAGCTCGCCTCGAGGGCTGCGTGA 116169
| || | ||||| || || | | ||| ||| | || || |||||
Sbjct 73970 TTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTC----AGTGCAGCGTGG 74025
Query 116170 TACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228
|| || || ||||| || | || | || | | || || ||| ||||| | |
Sbjct 74026 TAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGT-GCTTCAGGGGACTCAAAAGGCAT 74084
Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288
|| || || | || || ||||| || ||||| | |||||| || ||||| |
Sbjct 74085 GCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCG 74144
Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348
||| || || |||| || || ||||| ||| ||| || | | || ||
Sbjct 74145 CATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204
Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408
||| ||||||| |||| ||| || ||||||| | ||| | | | |
Sbjct 74205 GTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTT 74264
Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468
| | || | ||||||||||| || || || || ||||||| | ||||||
Sbjct 74265 GTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG 74324
Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528
|| ||||| ||||| || || || | || || || |||||| || | || ||
Sbjct 74325 GGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTT 74384
Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588
||||| ||| ||| || || ||||| ||||| | || | || || || ||
Sbjct 74385 CTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGT 74444
Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647
|||| | ||||| || | ||| | | || | | || | ||| | | || |
Sbjct 74445 CTGGGCTTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGAC 74503
Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGC 116706
|||||| ||| |||||| || || |||||||||||||| ||| ||| |||| |
Sbjct 74504 CCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTC-GCCATAGCAGTCTGCCAAG 74562
Query 116707 CCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765
||||| || || || || || | ||| | ||| | || || |||||| ||||||||
Sbjct 74563 CCTGG-GCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCAT 74621
Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825
||| ||||| ||||||||| ||| | || || || ||| || ||||||| | ||
Sbjct 74622 GAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCC 74681
Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882
|| || || | || | || || | || ||| || ||||| || || |||||
Sbjct 74682 GTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTA 74738
>seq126
Length=40607
Score = 131 bits (144), Expect = 2e-25
Identities = 345/521 (66%), Gaps = 7/521 (1%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| |||||||| |||||||| || || || || |||||| ||||||
Sbjct 38104 AGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACC 38163
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| ||||| || ||||||||| | || | || ||||| |||||
Sbjct 38164 AGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGAT 38223
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697
|| || ||| ||||| || | || |||| ||| |||| || | |||| |
Sbjct 38224 GCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGA 38282
Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757
|||||||| ||||| | ||||| ||| || || | || | || || | |
Sbjct 38283 TCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGA 38342
Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817
| || | | | |||||| || |||||||| | || || || || || ||||
Sbjct 38343 ACAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTT 38402
Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876
| ||| | ||| ||| || | ||| | ||||||| |||| || ||| |||
Sbjct 38403 CAGAGTGAATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATC 38461
Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936
|| ||||| | | || | | || || || ||||| ||||| || | ||
Sbjct 38462 TGAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCG 38521
Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993
|| || || || || | ||||| | ||| || | || ||||| || | ||||||
Sbjct 38522 AAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAG 38581
Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
|||| ||||||||| |||||||| | |||||| ||||||||
Sbjct 38582 TCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613500965233080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |