Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq545 140 4e-28 seq126 131 2e-25 >seq545 Length=97716 Score = 140 bits (154), Expect = 4e-28 Identities = 651/1017 (64%), Gaps = 20/1017 (2%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || || || ||| | | | |||||||||| |||||| || |||||||||||| Sbjct 73732 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCA 73791 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| || | || || | |||| |||||| ||||||||||| | |||||| ||| Sbjct 73792 TTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTG 73851 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAG-GGCGTCCCA-GTCGTAGTTGAGCTTTG 116053 || | ||| | |||| ||||| || | |||| | | || | | || | Sbjct 73852 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGG 73910 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 | | | ||||||||||||||||| ||||| |||||||| | || || |||||| | | Sbjct 73911 AGT-CACATCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGG 73969 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAAT----TCGGAGCTCGCCTCGAGGGCTGCGTGA 116169 | || | ||||| || || | | ||| ||| | || || ||||| Sbjct 73970 TTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTC----AGTGCAGCGTGG 74025 Query 116170 TACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228 || || || ||||| || | || | || | | || || ||| ||||| | | Sbjct 74026 TAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGT-GCTTCAGGGGACTCAAAAGGCAT 74084 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 || || || | || || ||||| || ||||| | |||||| || ||||| | Sbjct 74085 GCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCG 74144 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| || || |||| || || ||||| ||| ||| || | | || || Sbjct 74145 CATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 ||| ||||||| |||| ||| || ||||||| | ||| | | | | Sbjct 74205 GTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTT 74264 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | | || | ||||||||||| || || || || ||||||| | |||||| Sbjct 74265 GTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG 74324 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || ||||| ||||| || || || | || || || |||||| || | || || Sbjct 74325 GGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTT 74384 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 ||||| ||| ||| || || ||||| ||||| | || | || || || || Sbjct 74385 CTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGT 74444 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 |||| | ||||| || | ||| | | || | | || | ||| | | || | Sbjct 74445 CTGGGCTTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGAC 74503 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGC 116706 |||||| ||| |||||| || || |||||||||||||| ||| ||| |||| | Sbjct 74504 CCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTC-GCCATAGCAGTCTGCCAAG 74562 Query 116707 CCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765 ||||| || || || || || | ||| | ||| | || || |||||| |||||||| Sbjct 74563 CCTGG-GCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCAT 74621 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 ||| ||||| ||||||||| ||| | || || || ||| || ||||||| | || Sbjct 74622 GAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCC 74681 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || | || | || || | || ||| || ||||| || || ||||| Sbjct 74682 GTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTA 74738 >seq126 Length=40607 Score = 131 bits (144), Expect = 2e-25 Identities = 345/521 (66%), Gaps = 7/521 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||| |||||||| || || || || |||||| |||||| Sbjct 38104 AGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACC 38163 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| ||||| || ||||||||| | || | || ||||| ||||| Sbjct 38164 AGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGAT 38223 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697 || || ||| ||||| || | || |||| ||| |||| || | |||| | Sbjct 38224 GCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGA 38282 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||||||| ||||| | ||||| ||| || || | || | || || | | Sbjct 38283 TCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGA 38342 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || | | | |||||| || |||||||| | || || || || || |||| Sbjct 38343 ACAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTT 38402 Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 | ||| | ||| ||| || | ||| | ||||||| |||| || ||| ||| Sbjct 38403 CAGAGTGAATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATC 38461 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| | | || | | || || || ||||| ||||| || | || Sbjct 38462 TGAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCG 38521 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || || || || | ||||| | ||| || | || ||||| || | |||||| Sbjct 38522 AAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAG 38581 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| ||||||||| |||||||| | |||||| |||||||| Sbjct 38582 TCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500965233080