Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq545 183 5e-41
>seq545
Length=97716
Score = 183 bits (202), Expect = 5e-41
Identities = 395/580 (68%), Gaps = 8/580 (1%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896
|| |||||| ||||| || |||| || || | |||| ||||| | | || ||||||||
Sbjct 73371 CTGGTCCACAGTGAATTGGATGG-GTGCAGCAGCAG-CCTGCGTACGTAGGTAGTACATA 73428
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| |||||| | ||| ||| | ||||||| | | |||| || | ||
Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
|| || |||||||||||| |||||||| |||||| ||||||| | || || ||
Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076
||||| | | || || ||| ||||||||||| ||||||||| ||| || | |
Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608
Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| |||| | || | || ||| || |||||||||||||| || | | || |
Sbjct 73609 TCAGGAGG-AATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTT 73667
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194
| | | || ||| | | |||| | || ||| || || | || |||||||| ||
Sbjct 73668 CATATTGTCAGACCATA-GACCAAGATCGACCAGGTCACGTAGAAGCCAGGGGTTGACGA 73726
Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254
||| || || || | || || | || | | | |||| ||| | ||||| ||
Sbjct 73727 CCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGC 73786
Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314
||| |||||||| | |||||| | |||||||| || |||||||| || | ||| || |
Sbjct 73787 ACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAG 73846
Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCAC 204374
| ||||| ||||| | | || | | | ||||||||| ||||| || || |||
Sbjct 73847 AATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCAC 73906
Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414
|||| |||| ||||||| || ||||| | |||||||||
Sbjct 73907 TGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTTG 73946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795147119235280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |