Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq545 183 5e-41 >seq545 Length=97716 Score = 183 bits (202), Expect = 5e-41 Identities = 395/580 (68%), Gaps = 8/580 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || |||||| ||||| || |||| || || | |||| ||||| | | || |||||||| Sbjct 73371 CTGGTCCACAGTGAATTGGATGG-GTGCAGCAGCAG-CCTGCGTACGTAGGTAGTACATA 73428 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| |||||| | ||| ||| | ||||||| | | |||| || | || Sbjct 73429 CCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 73488 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||||||||| |||||||| |||||| ||||||| | || || || Sbjct 73489 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCA 73548 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| | | || || ||| ||||||||||| ||||||||| ||| || | | Sbjct 73549 GCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATA 73608 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | |||| | || | || ||| || |||||||||||||| || | | || | Sbjct 73609 TCAGGAGG-AATGCTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTT 73667 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 | | | || ||| | | |||| | || ||| || || | || |||||||| || Sbjct 73668 CATATTGTCAGACCATA-GACCAAGATCGACCAGGTCACGTAGAAGCCAGGGGTTGACGA 73726 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | || || | || | | | |||| ||| | ||||| || Sbjct 73727 CCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGC 73786 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||| |||||||| | |||||| | |||||||| || |||||||| || | ||| || | Sbjct 73787 ACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAG 73846 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCAC 204374 | ||||| ||||| | | || | | | ||||||||| ||||| || || ||| Sbjct 73847 AATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCAC 73906 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 |||| |||| ||||||| || ||||| | ||||||||| Sbjct 73907 TGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTTG 73946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795147119235280