Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq160 132 1e-25
seq734 123 6e-23
seq357 116 9e-21
>seq160
Length=36261
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||||||||||||||| || |||||||| |||| ||||||||| | || |||
Sbjct 3383 CGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 3442
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || || ||||| | |||||||||||||| ||| ||
Sbjct 3443 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCC 3502
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| ||||| | | || || ||||
Sbjct 3503 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGG 3562
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
|| || ||||||||||| || || || || |||
Sbjct 3563 GTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595
>seq734
Length=84471
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480
|||||||| ||||| |||||||| |||| ||||||||| | | || | ||||| ||
Sbjct 21465 ACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 21524
Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540
|| |||||||| || || |||||||||||||||||||| ||| || || |||||
Sbjct 21525 AGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 21584
Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600
||||| ||| ||| || | ||| || | || ||||| || | || || |||||
Sbjct 21585 ATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTT 21644
Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || |||||
Sbjct 21645 CCAGTTAGAGTCTTGACGAAGATTTG 21670
Score = 111 bits (122), Expect = 4e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
||| ||||| ||||||||||| | |||||||| | | || | ||||| || |||||
Sbjct 21242 GTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATCCTCAAGCTG 21301
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
|||||| ||||| |||||||||||||||||||| ||| || || ||||| |||||
Sbjct 21302 CTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTT 21361
Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605
||| ||| || | ||| || | | || || || | || || ||||| || ||
Sbjct 21362 GGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTTCCAGT 21421
Query 199606 GAGAGTTTTCACAAAAATTTG 199626
||||| || || || |||||
Sbjct 21422 TAGAGTCTTGACGAAGATTTG 21442
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480
|||||||| ||||| || || || |||| |||||||| | | || | ||||| ||
Sbjct 21693 ACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGATAGGGTGCGGCCATCCTCA 21752
Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540
||||||||||| ||||| |||||||||||||||||||| ||| || || |||||
Sbjct 21753 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 21812
Query 199541 ATCTT 199545
|||||
Sbjct 21813 ATCTT 21817
>seq357
Length=115873
Score = 116 bits (128), Expect = 9e-21
Identities = 138/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| || | ||||||||||| || || | ||||| ||||||||||| || |||||||
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || ||||||||||||||| ||| || || ||||||||||| ||| || |
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | || |||||||||||||| || || || || |
Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051
Query 199620 AAATTTG 199626
|||| ||
Sbjct 6052 AAATCTG 6058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178909319689471
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |