Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq160 131 2e-25 seq734 123 3e-23 seq357 98.7 1e-15 >seq160 Length=36261 Score = 131 bits (144), Expect = 2e-25 Identities = 141/184 (77%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || || ||||||||||| || || Sbjct 3412 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 3471 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 3472 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3530 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| || ||||| || |||||||| || || | Sbjct 3531 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 3590 Query 46581 CAAA 46584 | || Sbjct 3591 CGAA 3594 >seq734 Length=84471 Score = 123 bits (136), Expect = 3e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | |||||| |||| || | ||| ||||||||| |||||||| Sbjct 21212 TTACTGGCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTA 21271 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||||||| ||||| | || || |||||||| || ||||| || | ||||||||||| Sbjct 21272 GTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTC 21331 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||||||| |||||| ||||| ||| | | | || || | Sbjct 21332 CGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCCGAAG 21390 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || | || ||||| || || || || || || || ||||||||||| Sbjct 21391 ACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| || || || | ||| |||||| ||||| |||||||||||| Sbjct 21447 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 21506 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| || || || || | ||||||||||| | || Sbjct 21507 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGA 21566 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| |||||| ||||| ||| | | | || ||| || || || Sbjct 21567 ATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCGGATGACTCTAC 21625 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || || || || || || || ||||||||||| Sbjct 21626 TTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 Score = 104 bits (114), Expect = 3e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| || || || | ||| || || |||||||||||||||||| Sbjct 21675 CCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGAT 21734 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || ||||| || | ||||||||||| | || Sbjct 21735 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21794 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| |||||| ||||| ||| | | | || || || ||||| Sbjct 21795 ATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCCGAAGACTCCAC 21853 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCA 46571 || | || ||||| ||||| |||| Sbjct 21854 CTCGAGGGTAATGGTCTTGCCAGTCA 21879 >seq357 Length=115873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || |||||||| || || ||||| | || || ||||||||||| ||||| | Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| ||||| ||||| | Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | || || || || ||||| || || || || | Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051 Query 46584 AGATTTGCATTTTG 46597 | || ||||| ||| Sbjct 6052 AAATCTGCATCTTG 6065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232655764760