Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq126 271 8e-68
seq734 109 5e-19
seq160 93.3 4e-14
seq357 91.5 1e-13
>seq126
Length=40607
Score = 271 bits (300), Expect = 8e-68
Identities = 500/728 (69%), Gaps = 9/728 (1%)
Strand=Plus/Plus
Query 132718 ACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCC 132777
|| ||||| | ||| || || ||||| ||||||||| ||| ||| || | ||||
Sbjct 37925 ACAAGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCC 37984
Query 132778 AGCAGACGCACCGG-CAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836
|| |||| ||| || ||| || || ||||| || | |||||| | || ||||| ||
Sbjct 37985 AGTAGAC-CACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGT 38043
Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896
|| ||| | ||| | || ||| || || | || || ||||| || |||
Sbjct 38044 GATGATCTTTTGCACGAGGTCCTTGCTGGGGCGGTTGTTCAGGTGTGAGAACAGCAGGCA 38103
Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956
|||||||||| |||| ||||| || | |||||| || ||||| ||| |||| ||
Sbjct 38104 AGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACC 38163
Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016
|||||||| || || || ||||| || || | ||||||| ||||| || ||||
Sbjct 38164 AGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGAT 38223
Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076
||| ||||| || |||||||| |||||||||| | |||| || | || ||| || |||
Sbjct 38224 GCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGTCGACTCCTTGTCGGTGAT 38283
Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136
||| ||| ||||| |||||||| || ||| || || || || || || || ||
Sbjct 38284 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAA 38343
Query 133137 CAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATT 133194
| | | | | | || || | | |||||||||||| || ||| || ||
Sbjct 38344 C--AGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTT 38401
Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254
|| ||||| | ||| ||||| ||| || || ||||| ||||| || |||||| | |
Sbjct 38402 TCAGAGTGAATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATC 38461
Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314
|| || || | ||| ||||| || || ||||||||||| ||||| || |||||||
Sbjct 38462 TGAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCG 38521
Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAG 133371
|| ||||| || | ||| |||||| | |||||| | ||||| ||| | ||||
Sbjct 38522 AAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAG 38581
Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431
||| | |||||||| || || | |||||| | ||||| || || ||||| || ||
Sbjct 38582 TCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTC 38641
Query 133432 TTGTACAT 133439
||||||||
Sbjct 38642 TTGTACAT 38649
>seq734
Length=84471
Score = 109 bits (120), Expect = 5e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || ||||| ||| |||| || ||| | ||
Sbjct 21673 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAAGTAGAGTCATCC 21614
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| ||||| ||||| |||||| | |||||
Sbjct 21613 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 21555
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| || || || || || || || | |||||||| |||||||||
Sbjct 21554 GCAGCGTCTCATTTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAA 21495
Query 38423 CATCCAAAAGGA 38434
|||||| |||||
Sbjct 21494 CATCCAGAAGGA 21483
>seq160
Length=36261
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| | | |||| |
Sbjct 3594 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 3535
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 3534 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 3476
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | || ||||| ||||| || || | ||||| || ||||||||||||||| ||
Sbjct 3475 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 3416
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| | || || || | || ||||||
Sbjct 3415 GGAGTCCACCCTCCACCTTGTCCTGCGT 3388
>seq357
Length=115873
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 6064 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6005
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | || || || | ||||| ||||| ||||| | |||
Sbjct 6004 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGAC 5945
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| |||||||| || | |||||||| ||||||
Sbjct 5944 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTAC 5885
Query 38421 AACATCCAAAAGG 38433
||||| || ||||
Sbjct 5884 AACATTCAGAAGG 5872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500167716993920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |