Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq813 205 1e-47
seq545 84.2 3e-11
>seq813
Length=72463
Score = 205 bits (226), Expect = 1e-47
Identities = 284/398 (71%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
||||||||||||| ||| ||||| || ||||| | ||||| || |||||||| | |||
Sbjct 20426 TCTTCACCACCCAGGTGGGTATCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCA 20485
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | | || ||| ||||| || |||||||||||||| || || || || |||||
Sbjct 20486 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 20545
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
||| | || ||||| || |||||||| || || || || || || || || || ||
Sbjct 20546 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTAGGCTCGTTGATG 20605
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| || ||||||||| ||||| | | || || || || || || || ||
Sbjct 20606 ATACGCAGGACGTTCAGGCCGGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 20665
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| |||||||| ||||| || | ||| |||| |||| | | || || || ||
Sbjct 20666 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACAGTGGTGCCCAGGTAGGAC 20725
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | || ||| ||||| |||||||| || || |||||||||| | |||||
Sbjct 20726 TCGGCAGTCTCACGCATCTTGGTCAGAACCATAGAGGAGATCTCTTCAGGGGTGAACTGC 20785
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860
|| || ||||| || || || || || || || || ||
Sbjct 20786 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 20823
>seq545
Length=97716
Score = 84.2 bits (92), Expect = 3e-11
Identities = 369/576 (64%), Gaps = 21/576 (4%)
Strand=Plus/Plus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618
||||| || |||||||||| || ||||| | ||| |||| ||||| ||| |
Sbjct 74608 TCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGG 74667
Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678
| ||||| | || || ||| || | ||||| || || | | ||| || ||||||
Sbjct 74668 ACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCAT 74727
Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732
|| || | || | |||| | || | ||| || | || | |||||
Sbjct 74728 GGCTCGAGGTAAATAGCAAAGGCTCCGG---GTCGCTTGTTTCCACCCTGGTCAACATAA 74784
Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792
| ||||| ||| | || || | ||| |||| ||| || | || || || || ||
Sbjct 74785 CGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGAAGTACCGTTAGTG 74844
Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852
||| ||| | || | | ||||| | | |||||| | | || ||||| || |||
Sbjct 74845 CCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCGGCC 74904
Query 105853 CACTT---ACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCT 105909
||| | | || ||||| | |||| | ||||||||||| || |||||||| ||
Sbjct 74905 ATCTTGGAAATCATG-GCGCA-AGTCTTG-AGGGTATCGTAAATGCCTTCGATACTGTCA 74961
Query 105910 TCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAAC 105969
|| || | ||| |||||||| || |||| || | ||| ||||| ||||||||
Sbjct 74962 TCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACCGGCATTGAAG 75021
Query 105970 AGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATA---ACGCTTCGTATGTTTCCAGG 106026
|| || |||| ||| ||| |||| || ||| | | | | | || ||| ||||| ||
Sbjct 75022 AGCGTAGGTGATGCGTGAGTGAAGAA--CTTGCTAGACATAAGGTT-GTAGGTTTCAAGC 75078
Query 106027 ACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGT 106086
||| | || | | || || |||||| | ||| || ||||| | | |||||
Sbjct 75079 ACGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCATTATCATGTGCTGGGGA 75138
Query 106087 GTTTCAATAATTTCACCGTCAATTTTCTGGAGATAC 106122
||||| || | ||||||| ||| | ||||||
Sbjct 75139 CGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATAC 75174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635126345462920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |