Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq813 205 1e-47 seq545 84.2 3e-11 >seq813 Length=72463 Score = 205 bits (226), Expect = 1e-47 Identities = 284/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||||||||||| ||| ||||| || ||||| | ||||| || |||||||| | ||| Sbjct 20426 TCTTCACCACCCAGGTGGGTATCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCA 20485 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || ||| ||||| || |||||||||||||| || || || || ||||| Sbjct 20486 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 20545 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || ||||| || |||||||| || || || || || || || || || || Sbjct 20546 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTAGGCTCGTTGATG 20605 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||||||||| ||||| | | || || || || || || || || Sbjct 20606 ATACGCAGGACGTTCAGGCCGGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 20665 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || | ||| |||| |||| | | || || || || Sbjct 20666 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACAGTGGTGCCCAGGTAGGAC 20725 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||||| |||||||| || || |||||||||| | ||||| Sbjct 20726 TCGGCAGTCTCACGCATCTTGGTCAGAACCATAGAGGAGATCTCTTCAGGGGTGAACTGC 20785 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || || || || || || Sbjct 20786 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 20823 >seq545 Length=97716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 369/576 (64%), Gaps = 21/576 (4%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||||| || ||||| | ||| |||| ||||| ||| | Sbjct 74608 TCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGG 74667 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 | ||||| | || || ||| || | ||||| || || | | ||| || |||||| Sbjct 74668 ACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCAT 74727 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | || | |||| | || | ||| || | || | ||||| Sbjct 74728 GGCTCGAGGTAAATAGCAAAGGCTCCGG---GTCGCTTGTTTCCACCCTGGTCAACATAA 74784 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 | ||||| ||| | || || | ||| |||| ||| || | || || || || || Sbjct 74785 CGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGAAGTACCGTTAGTG 74844 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 ||| ||| | || | | ||||| | | |||||| | | || ||||| || ||| Sbjct 74845 CCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCGGCC 74904 Query 105853 CACTT---ACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCT 105909 ||| | | || ||||| | |||| | ||||||||||| || |||||||| || Sbjct 74905 ATCTTGGAAATCATG-GCGCA-AGTCTTG-AGGGTATCGTAAATGCCTTCGATACTGTCA 74961 Query 105910 TCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAAC 105969 || || | ||| |||||||| || |||| || | ||| ||||| |||||||| Sbjct 74962 TCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACCGGCATTGAAG 75021 Query 105970 AGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATA---ACGCTTCGTATGTTTCCAGG 106026 || || |||| ||| ||| |||| || ||| | | | | | || ||| ||||| || Sbjct 75022 AGCGTAGGTGATGCGTGAGTGAAGAA--CTTGCTAGACATAAGGTT-GTAGGTTTCAAGC 75078 Query 106027 ACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGT 106086 ||| | || | | || || |||||| | ||| || ||||| | | ||||| Sbjct 75079 ACGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCATTATCATGTGCTGGGGA 75138 Query 106087 GTTTCAATAATTTCACCGTCAATTTTCTGGAGATAC 106122 ||||| || | ||||||| ||| | |||||| Sbjct 75139 CGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATAC 75174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126345462920