Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq545 176 6e-39 seq126 98.7 1e-15 >seq545 Length=97716 Score = 176 bits (194), Expect = 6e-39 Identities = 1054/1662 (63%), Gaps = 65/1662 (4%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| |||| || |||||||| || ||||| || | || |||| Sbjct 75044 TTCACTCACGCATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCA 74985 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 |||||||| ||| | || || || ||| | |||||||||| || |||| Sbjct 74984 TGTTTCCTAGTTGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACT 74925 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 || ||| || || ||| ||| ||||||||||| | | | || | | | ||| Sbjct 74924 TGCGCCATGATTTCCAAGATGGCCGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCC 74865 Query 111885 AACAAGTCTCGTA--TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 | | ||| || || || || || ||| || | || ||| |||| ||||| | Sbjct 74864 ACT--GGCTCCTACATTGCTGGCACTAACGGTACTTCGAACGGCATTGTTCCCATGCTGC 74807 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGAT 111996 | || || ||| ||| || || ||||| |||| | ||| ||| | | ||| Sbjct 74806 GTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCC---GGAG 74750 Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056 | | || | || || ||||||||||| || ||| || | |||||||| || | || Sbjct 74749 CCTTTGCTATTTACCTCGAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCA 74690 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCA 112115 ||||| || | || || | || ||| || || || || | || |||||||| Sbjct 74689 AGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTATTTTTGGCCCTCTGGATCTGT 74631 Query 112116 GATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AA 112174 || || ||||||||| | |||||| ||| || | ||| | ||| | || || | || Sbjct 74630 GACCTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAA 74571 Query 112175 GGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACG 112233 || || || | | || ||| ||| || |||||||| || || || |||||| | Sbjct 74570 TGC-CCAGGCTTGGCAGACTGCTATGGC-GAAGAGTTTGAGGCTCTGTATGAAAAGTATG 74513 Query 112234 AGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCC-GATG-TGTGGAAAGCTATTCT 112291 || | || |||| | | | || | || || || || | ||||| | || ||||| Sbjct 74512 AGAAGGAGGGTCGCG-GTC-GCATGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCT 74455 Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 | | || || || ||||| | || | ||||||||||||||| ||| |||| || Sbjct 74454 GGAAGCCCAGACTGAAACTGGCAACCCTTTCATGCTTTACAAAGACCACTGCAACCGCAA 74395 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| ||||| || ||| | ||| || || || ||||| || || || || | || Sbjct 74394 GAGCAATCAGAAAAATCTAGGTACCATTCGCAGCTCTAACCTATGCACTGAGATTATTGA 74335 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 | | | | |||||| |||||||| ||||| ||||| |||| || || | Sbjct 74334 GTATTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCTT 74275 Query 112472 TGTGGATCCAGAGACAAAGACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACT 112529 ||||| | | | |||| | | ||| | | |||| || |||||||| || | | Sbjct 74274 CGTGGA-CTACA-ACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAGGTT 74217 Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 112589 || |||||| ||| | | |||||| || || || || || |||| Sbjct 74216 GTTGTTCGAAACCTGAACCGCATCATTGATGTGAACCACTATCCTGTACAGGAAGCTCAC 74157 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 || || ||| | || ||||| ||||| | ||||| || ||||| || || | ||| Sbjct 74156 AACAGCAACATGCGCCATCGTCCCATTGGCGTTGGTGTGCAGGGTCTGGCTGACGCCTTC 74097 Query 112650 ATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTT 112709 || | ||| | ||||| ||| ||||| | |||| || |||||| Sbjct 74096 CTTGCTCTACGCATGCCTTTTGAGTCCCCTGAAGCACGTCAGCTCAACAAGCAAATATTT 74037 Query 112710 GAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGT 112766 || || || || ||||| || || || |||| || | || || || ||| Sbjct 74036 GAAACCATCTACCACGCTGCACTGACTGC---TTCGATGGAAATCGCCCAGACCGAGGGT 73980 Query 112767 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 | || ||||| |||||||||||| | || ||||| | || || |||||||||||| Sbjct 73979 ACTTACTCAACCTATGAGGGTTCTCCTGTCTCCCAAGGCATCCTGCAGTTTGATATGTGG 73920 Query 112827 GAAGGTGAGACCAAGCTTCAC---TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAG 112883 || | ||| || || | || | || ||| |||| ||||| || || || Sbjct 73919 GATG-TGACTCCCAG--TGACCTGTGGGATTGGACTTCTCTGAAGGAGAAGATTAAACAG 73863 Query 112884 AAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATC 112943 | ||| | || || |||| | | ||||| ||||| |||||| ||| |||| || Sbjct 73862 CATGGTGTACGCAATTCTCTTCTCGTTGCACCCATGCCTACAGCCAGCACATCACAGATT 73803 Query 112944 TTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTC 113003 | || || ||||| |||||||||||||||||| | |||||||| | | | | || Sbjct 73802 CTTGGCAACAATGAGTGCTTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCTT 73743 Query 113004 GCGGGAGAGTTTGTGATTGTCAA---CAAGCATCT-CGTGGATGACCTCAAAGAGATTGG 113059 || || ||||| | | ||||| | || ||| || |||||| || |||| Sbjct 73742 GCTGGCGAGTTCCAGGTCGTCAACCCCTGGCTTCTACG----TGACCTGGTCGATCTTGG 73687 Query 113060 TCTCTGGTCCAAGGATATGAAGGATCTCA----TGGTGAAAGCGGGTGGTTCCATTCAAA 113115 ||| ||||| | |||||||| ||| || || || | | || |||||||| | Sbjct 73686 TCTATGGTCTGACAATATGAAGAATCGCATTATTGCCGACAAC----GGCTCCATTCAGA 73631 Query 113116 ATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAAT---CA 113172 | ||| ||||| ||| ||||| ||||| || |||||||| || | Sbjct 73630 ACATTTCCAGCATTCCTCCTGATATTAAAGCTCTGTACAAGACGGTTTGGGAGATTTCCC 73571 Query 113173 AGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAA 113232 || | | || | | ||||| || || |||||| |||||||| ||| || | Sbjct 73570 AGCGTACAGTTG---TACAAATGGCTGCTGACCGTGGTGCTTTCATTGACCAA--TCGCA 73516 Query 113233 GTATGAATCTATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTA 113290 || | | ||| |||| || ||| || ||| |||| || | |||||| | Sbjct 73515 GTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGC 73456 Query 113291 CAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332 | | ||||| ||| ||||| ||||| ||||| ||||| || Sbjct 73455 CGGCTGGAAACTGGGCCTCAAGACGGGTATGTACTACCTACG 73414 >seq126 Length=40607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 102129 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 102185 || || || |||||| |||||||| | |||| ||||| |||| || |||| Sbjct 38307 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGA---CCTTCGCCCAGCGC 38251 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || || || ||| || || ||||| ||||| ||| | ||| | |||||| Sbjct 38250 CTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTC 38191 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||| ||||||||||| ||||| |||||| ||||||||||| || ||| Sbjct 38190 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGT 38131 Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| || ||| || ||||| Sbjct 38130 GATGAGGGTCTGCACACCGACTTTGC 38105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736091705360