Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq545 176 6e-39
seq126 98.7 1e-15
>seq545
Length=97716
Score = 176 bits (194), Expect = 6e-39
Identities = 1054/1662 (63%), Gaps = 65/1662 (4%)
Strand=Plus/Minus
Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764
|||| |||||| |||| || |||||||| || ||||| || | || ||||
Sbjct 75044 TTCACTCACGCATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCA 74985
Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824
|||||||| ||| | || || || ||| | |||||||||| || ||||
Sbjct 74984 TGTTTCCTAGTTGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAGACT 74925
Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884
|| ||| || || ||| ||| ||||||||||| | | | || | | | |||
Sbjct 74924 TGCGCCATGATTTCCAAGATGGCCGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCC 74865
Query 111885 AACAAGTCTCGTA--TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942
| | ||| || || || || || ||| || | || ||| |||| ||||| |
Sbjct 74864 ACT--GGCTCCTACATTGCTGGCACTAACGGTACTTCGAACGGCATTGTTCCCATGCTGC 74807
Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGAT 111996
| || || ||| ||| || || ||||| |||| | ||| ||| | | |||
Sbjct 74806 GTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCC---GGAG 74750
Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056
| | || | || || ||||||||||| || ||| || | |||||||| || | ||
Sbjct 74749 CCTTTGCTATTTACCTCGAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCA 74690
Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCA 112115
||||| || | || || | || ||| || || || || | || ||||||||
Sbjct 74689 AGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTATTTTTGGCCCTCTGGATCTGT 74631
Query 112116 GATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AA 112174
|| || ||||||||| | |||||| ||| || | ||| | ||| | || || | ||
Sbjct 74630 GACCTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAA 74571
Query 112175 GGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACG 112233
|| || || | | || ||| ||| || |||||||| || || || |||||| |
Sbjct 74570 TGC-CCAGGCTTGGCAGACTGCTATGGC-GAAGAGTTTGAGGCTCTGTATGAAAAGTATG 74513
Query 112234 AGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCC-GATG-TGTGGAAAGCTATTCT 112291
|| | || |||| | | | || | || || || || | ||||| | || |||||
Sbjct 74512 AGAAGGAGGGTCGCG-GTC-GCATGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCT 74455
Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351
| | || || || ||||| | || | ||||||||||||||| ||| |||| ||
Sbjct 74454 GGAAGCCCAGACTGAAACTGGCAACCCTTTCATGCTTTACAAAGACCACTGCAACCGCAA 74395
Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411
||| ||||| || ||| | ||| || || || ||||| || || || || | ||
Sbjct 74394 GAGCAATCAGAAAAATCTAGGTACCATTCGCAGCTCTAACCTATGCACTGAGATTATTGA 74335
Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471
| | | | |||||| |||||||| ||||| ||||| |||| || || |
Sbjct 74334 GTATTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCTT 74275
Query 112472 TGTGGATCCAGAGACAAAGACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACT 112529
||||| | | | |||| | | ||| | | |||| || |||||||| || | |
Sbjct 74274 CGTGGA-CTACA-ACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAGGTT 74217
Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 112589
|| |||||| ||| | | |||||| || || || || || ||||
Sbjct 74216 GTTGTTCGAAACCTGAACCGCATCATTGATGTGAACCACTATCCTGTACAGGAAGCTCAC 74157
Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649
|| || ||| | || ||||| ||||| | ||||| || ||||| || || | |||
Sbjct 74156 AACAGCAACATGCGCCATCGTCCCATTGGCGTTGGTGTGCAGGGTCTGGCTGACGCCTTC 74097
Query 112650 ATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTT 112709
|| | ||| | ||||| ||| ||||| | |||| || ||||||
Sbjct 74096 CTTGCTCTACGCATGCCTTTTGAGTCCCCTGAAGCACGTCAGCTCAACAAGCAAATATTT 74037
Query 112710 GAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGT 112766
|| || || || ||||| || || || |||| || | || || || |||
Sbjct 74036 GAAACCATCTACCACGCTGCACTGACTGC---TTCGATGGAAATCGCCCAGACCGAGGGT 73980
Query 112767 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826
| || ||||| |||||||||||| | || ||||| | || || ||||||||||||
Sbjct 73979 ACTTACTCAACCTATGAGGGTTCTCCTGTCTCCCAAGGCATCCTGCAGTTTGATATGTGG 73920
Query 112827 GAAGGTGAGACCAAGCTTCAC---TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAG 112883
|| | ||| || || | || | || ||| |||| ||||| || || ||
Sbjct 73919 GATG-TGACTCCCAG--TGACCTGTGGGATTGGACTTCTCTGAAGGAGAAGATTAAACAG 73863
Query 112884 AAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATC 112943
| ||| | || || |||| | | ||||| ||||| |||||| ||| |||| ||
Sbjct 73862 CATGGTGTACGCAATTCTCTTCTCGTTGCACCCATGCCTACAGCCAGCACATCACAGATT 73803
Query 112944 TTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTC 113003
| || || ||||| |||||||||||||||||| | |||||||| | | | | ||
Sbjct 73802 CTTGGCAACAATGAGTGCTTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCTT 73743
Query 113004 GCGGGAGAGTTTGTGATTGTCAA---CAAGCATCT-CGTGGATGACCTCAAAGAGATTGG 113059
|| || ||||| | | ||||| | || ||| || |||||| || ||||
Sbjct 73742 GCTGGCGAGTTCCAGGTCGTCAACCCCTGGCTTCTACG----TGACCTGGTCGATCTTGG 73687
Query 113060 TCTCTGGTCCAAGGATATGAAGGATCTCA----TGGTGAAAGCGGGTGGTTCCATTCAAA 113115
||| ||||| | |||||||| ||| || || || | | || |||||||| |
Sbjct 73686 TCTATGGTCTGACAATATGAAGAATCGCATTATTGCCGACAAC----GGCTCCATTCAGA 73631
Query 113116 ATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAAT---CA 113172
| ||| ||||| ||| ||||| ||||| || |||||||| || |
Sbjct 73630 ACATTTCCAGCATTCCTCCTGATATTAAAGCTCTGTACAAGACGGTTTGGGAGATTTCCC 73571
Query 113173 AGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAA 113232
|| | | || | | ||||| || || |||||| |||||||| ||| || |
Sbjct 73570 AGCGTACAGTTG---TACAAATGGCTGCTGACCGTGGTGCTTTCATTGACCAA--TCGCA 73516
Query 113233 GTATGAATCTATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTA 113290
|| | | ||| |||| || ||| || ||| |||| || | |||||| |
Sbjct 73515 GTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGC 73456
Query 113291 CAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332
| | ||||| ||| ||||| ||||| ||||| ||||| ||
Sbjct 73455 CGGCTGGAAACTGGGCCTCAAGACGGGTATGTACTACCTACG 73414
>seq126
Length=40607
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 102129 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 102185
|| || || |||||| |||||||| | |||| ||||| |||| || ||||
Sbjct 38307 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGA---CCTTCGCCCAGCGC 38251
Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245
|| | || || || ||| || || ||||| ||||| ||| | ||| | ||||||
Sbjct 38250 CTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTC 38191
Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305
||||| ||||| ||||||||||| ||||| |||||| ||||||||||| || |||
Sbjct 38190 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGT 38131
Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331
|| ||||| || ||| || |||||
Sbjct 38130 GATGAGGGTCTGCACACCGACTTTGC 38105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620736091705360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |