Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq545 178 2e-39 seq367 104 3e-17 >seq545 Length=97716 Score = 178 bits (196), Expect = 2e-39 Identities = 1095/1733 (63%), Gaps = 75/1733 (4%) Strand=Plus/Plus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 |||||||| ||| ||| |||| || || || || ||||||||||| ||||| || Sbjct 73384 AATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATACCCGTCTTGAGGCCC 73443 Query 109438 GCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAAC 109497 ||||| || | ||||| | || ||| | || ||| | ||| Sbjct 73444 AGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGA 73503 Query 109498 AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA-- 109555 | ||| | ||||| || || || ||||| |||||| ||||| ||||| | | | Sbjct 73504 ATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGTACAACT 73563 Query 109556 -TACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 ||| || || ||| ||||| || |||||||||| | || |||||| |||||| Sbjct 73564 GTACGCT---GGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATATCAGGAGGAATG 73620 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGAC 109674 ||||| ||||| ||||| | | ||| ||| |||||| | | ||| Sbjct 73621 CTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTCATATTGTCAGAC 73680 Query 109675 CAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCA 109731 || ||||| | | || |||| ||| || | ||||| || || || Sbjct 73681 CATAGACCAAGATCGACCAG---GTCACGTAGAAGCCAGGGGTTGACGACCTGGAACTCG 73737 Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 |||||||| ||| || |||||||||| | |||||||||||| || |||||||||||| Sbjct 73738 CCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTG 73797 Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851 || || || |||| ||| ||||| |||||||| || | ||||||| || || | | Sbjct 73798 CCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACA 73857 Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 || | | || | | ||| || | |||||| | | |||| |||| Sbjct 73858 CCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCACTGGG---AGTC 73914 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 || ||||||||||| || || | || | | |||||||||||| | | Sbjct 73915 ACA---TCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGGTT 73971 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATA 110031 ||| | ||||| || ||| | || ||||| ||||| || || || || Sbjct 73972 GAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTCAGTGCAGCGTGGTAGATG 74031 Query 110032 GTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAG---TCGAAGGGAAGACCA 110088 || ||||| || || || |||| || ||||| | || || || | | Sbjct 74032 GTTTCAAATATTTGC---TTGTTGAGCTGACGTGCTTCAGGGGACTCAAAAGGCATGCGT 74088 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | || || | || || |||||||| ||||| | |||||||| ||||| |||| Sbjct 74089 AGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCGCATG 74148 Query 110149 TTAGAGC-GTCGAGCAGTTTC---TACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 || || || | | || ||| ||| || || ||| || |||| || || || Sbjct 74149 TT---GCTGTTGTG-AGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204 Query 110205 ATTCTTCGTC--ACAGTCTTCGTGATTTCATGGAGTTT------GTCGTAATCGAACGTT 110256 || ||| ||| || |||| ||| || || || ||| || || | | || Sbjct 74205 GTT--TCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTC-ACCCTT 74261 Query 110257 TTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGT 110315 | || ||| || | || || || | ||| || || |||||||||| Sbjct 74262 GTTGTAGTCC------ACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGAC 74315 Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375 ||| || | | || || | ||| || || || | ||| || || |||| ||| Sbjct 74316 CTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACC 74375 Query 110376 CAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACC 110435 | || |||||||| ||| |||||| || || || |||||| | ||| | || Sbjct 74376 TAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCC 74435 Query 110436 AGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGC 110492 |||||| ||||| | | |||||||| | ||| | | || | ||| |||| ||| Sbjct 74436 AGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAGCTTCTG-GGCCTTGACAACCATGC 74494 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 | | || |||| |||| ||| ||||| |||| ||||||| || | || || Sbjct 74495 G--ACCGCGACCCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCA 74552 Query 110553 ATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 || | | | ||| || || | ||| || | ||| | ||| | || || ||||| Sbjct 74553 GTCTGCCA-AGCCTGGGCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAA 74611 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | | |||||||||||||||| ||||| | ||| | || |||||||| ||| | | Sbjct 74612 CACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTT 74671 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 |||| | || ||||| |||||| || | || || | || ||| | |||||||| | Sbjct 74672 CTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCT 74731 Query 110732 CGAGATAGACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTG 110785 |||| || | ||| | || ||| ||| | || |||||| |||||| || | Sbjct 74732 CGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCAC---CCTGGTCAACATAACGGG 74788 Query 110786 CTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCC 110845 | ||| ||||| || | ||||| |||| ||| || | || ||| || || || Sbjct 74789 CGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGAAGTACCGTTAGTGCCAG 74848 Query 110846 TAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACT 110905 ||| ||| | |||||||||| ||| | || | ||| |||||||| ||| || Sbjct 74849 CAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCGGCCATCT 74908 Query 110906 TACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTT 110963 | ||| | | ||| | ||| |||| ||| | ||||| || || || || | || Sbjct 74909 TGGAAATCATGGCGCA-AGTCT-TGAGGGTATCGTAAATGCCTTCGATACTGTCATCTTT 74966 Query 110964 GTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGT 111023 || ||| ||| || || ||||||| ||| | | || || || ||||||||||| || Sbjct 74967 CATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACCGGCATTGAAGAGCGT 75026 Query 111024 AGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 ||||| || ||| ||| ||| |||| ||||| |||||| || || || Sbjct 75027 AGGTGATGCGTGAGTGA--AGAACTTGCTAGACATAAGGTTGTAGGTTTCAAG 75077 >seq367 Length=17319 Score = 104 bits (114), Expect = 3e-17 Identities = 336/511 (66%), Gaps = 28/511 (5%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||||||||| || || | | || || | ||| || | ||| | ||||| || | Sbjct 13052 CGATCGAAACGGCCGGGTCTCATCAGCGCCTTATCCAGGACATCAGCGCGGTTGGTGCCA 12993 Query 11563 GCAATGACTACAAT--GCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| || || || | | ||| ||| || |||||||| || || | ||||| Sbjct 12992 GCCAGGACGACGATTTGCTCGGCGG--TGTTGAAGCCATCCATTTCGGTCAGGATCTGGT 12935 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC----CGAA-CGCTTCT- 11674 ||| ||| || ||||||||||| | || || | ||| |||| ||||||| Sbjct 12934 TGAGCGTGGACTCGCGCTCATCGTT----GCCACCCCCCATGCGGTTCGAATCGCTTCTG 12879 Query 11675 ----TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730 || | ||||||||||||||| || || | ||| || || ||| || | | Sbjct 12878 GAGCGGCCAATAGCGTCAATCTCATCAATAAAGATGATGCATGGCGCGTTCTTGCGCG-C 12820 Query 11731 TGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 ||| | ||||| ||||| |||||| || || || || || |||||||| || || | Sbjct 12819 TGTAGCAAAAAGATCACGCACACGCGACGGACCCACGCCGACAAACATCTCGACAAACTC 12760 Query 11790 TGCGGCA-GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | | || || || || ||| ||||| ||||| ||||| |||| || || | Sbjct 12759 GGAGCCACTGACGCT-AAAGAACGGAACGCCCGACTCGCCAGCCGTGGCCTTGGCTAGCA 12701 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-- 11906 | ||||| ||||| || || | || | || | ||||| || ||||| |||||||| Sbjct 12700 GCGTCTTGCCCGTTCCCGGAGGGCCCGATAGGATAGCGCCGCGCGGGATTTTGGCACCCA 12641 Query 11907 -ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || |||| | || ||||| |||||||| | || | |||| | || ||| Sbjct 12640 GACGCACAAACT---TTTCGGGCTTTTTGAGGAACTGGACGAACTCCATGATCTCGACCT 12584 Query 11966 TGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| ||| || || | |||||||| || Sbjct 12583 TGGCCTCGTCCATTCCGGCCACATCGGTAAA 12553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970014531400