Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq545 178 2e-39
seq367 104 3e-17
>seq545
Length=97716
Score = 178 bits (196), Expect = 2e-39
Identities = 1095/1733 (63%), Gaps = 75/1733 (4%)
Strand=Plus/Plus
Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437
|||||||| ||| ||| |||| || || || || ||||||||||| ||||| ||
Sbjct 73384 AATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATACCCGTCTTGAGGCCC 73443
Query 109438 GCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAAC 109497
||||| || | ||||| | || ||| | || ||| | |||
Sbjct 73444 AGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGA 73503
Query 109498 AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA-- 109555
| ||| | ||||| || || || ||||| |||||| ||||| ||||| | | |
Sbjct 73504 ATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGTACAACT 73563
Query 109556 -TACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614
||| || || ||| ||||| || |||||||||| | || |||||| ||||||
Sbjct 73564 GTACGCT---GGGAAATCTCCCAAACCGTCTTGTACAGAGCTTTAATATCAGGAGGAATG 73620
Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGAC 109674
||||| ||||| ||||| | | ||| ||| |||||| | | |||
Sbjct 73621 CTGGAAATGTTCTGAATGGAGCCGTTGTCGGCAATAATGCGATTCTTCATATTGTCAGAC 73680
Query 109675 CAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCA 109731
|| ||||| | | || |||| ||| || | ||||| || || ||
Sbjct 73681 CATAGACCAAGATCGACCAG---GTCACGTAGAAGCCAGGGGTTGACGACCTGGAACTCG 73737
Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791
|||||||| ||| || |||||||||| | |||||||||||| || ||||||||||||
Sbjct 73738 CCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTG 73797
Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851
|| || || |||| ||| ||||| |||||||| || | ||||||| || || | |
Sbjct 73798 CCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACA 73857
Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911
|| | | || | | ||| || | |||||| | | |||| ||||
Sbjct 73858 CCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCACTGGG---AGTC 73914
Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971
|| ||||||||||| || || | || | | |||||||||||| | |
Sbjct 73915 ACA---TCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGGTT 73971
Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATA 110031
||| | ||||| || ||| | || ||||| ||||| || || || ||
Sbjct 73972 GAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTCAGTGCAGCGTGGTAGATG 74031
Query 110032 GTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAG---TCGAAGGGAAGACCA 110088
|| ||||| || || || |||| || ||||| | || || || | |
Sbjct 74032 GTTTCAAATATTTGC---TTGTTGAGCTGACGTGCTTCAGGGGACTCAAAAGGCATGCGT 74088
Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148
| || || | || || |||||||| ||||| | |||||||| ||||| ||||
Sbjct 74089 AGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCGCATG 74148
Query 110149 TTAGAGC-GTCGAGCAGTTTC---TACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204
|| || || | | || ||| ||| || || ||| || |||| || || ||
Sbjct 74149 TT---GCTGTTGTG-AGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204
Query 110205 ATTCTTCGTC--ACAGTCTTCGTGATTTCATGGAGTTT------GTCGTAATCGAACGTT 110256
|| ||| ||| || |||| ||| || || || ||| || || | | ||
Sbjct 74205 GTT--TCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTC-ACCCTT 74261
Query 110257 TTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGT 110315
| || ||| || | || || || | ||| || || ||||||||||
Sbjct 74262 GTTGTAGTCC------ACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGAC 74315
Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375
||| || | | || || | ||| || || || | ||| || || |||| |||
Sbjct 74316 CTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACC 74375
Query 110376 CAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACC 110435
| || |||||||| ||| |||||| || || || |||||| | ||| | ||
Sbjct 74376 TAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCC 74435
Query 110436 AGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGC 110492
|||||| ||||| | | |||||||| | ||| | | || | ||| |||| |||
Sbjct 74436 AGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAGCTTCTG-GGCCTTGACAACCATGC 74494
Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552
| | || |||| |||| ||| ||||| |||| ||||||| || | || ||
Sbjct 74495 G--ACCGCGACCCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCA 74552
Query 110553 ATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611
|| | | | ||| || || | ||| || | ||| | ||| | || || |||||
Sbjct 74553 GTCTGCCA-AGCCTGGGCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAA 74611
Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671
| | |||||||||||||||| ||||| | ||| | || |||||||| ||| | |
Sbjct 74612 CACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTT 74671
Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731
|||| | || ||||| |||||| || | || || | || ||| | |||||||| |
Sbjct 74672 CTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCT 74731
Query 110732 CGAGATAGACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTG 110785
|||| || | ||| | || ||| ||| | || |||||| |||||| || |
Sbjct 74732 CGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCAC---CCTGGTCAACATAACGGG 74788
Query 110786 CTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCC 110845
| ||| ||||| || | ||||| |||| ||| || | || ||| || || ||
Sbjct 74789 CGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGAAGTACCGTTAGTGCCAG 74848
Query 110846 TAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACT 110905
||| ||| | |||||||||| ||| | || | ||| |||||||| ||| ||
Sbjct 74849 CAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCGGCCATCT 74908
Query 110906 TACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTT 110963
| ||| | | ||| | ||| |||| ||| | ||||| || || || || | ||
Sbjct 74909 TGGAAATCATGGCGCA-AGTCT-TGAGGGTATCGTAAATGCCTTCGATACTGTCATCTTT 74966
Query 110964 GTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGT 111023
|| ||| ||| || || ||||||| ||| | | || || || ||||||||||| ||
Sbjct 74967 CATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACCGGCATTGAAGAGCGT 75026
Query 111024 AGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074
||||| || ||| ||| ||| |||| ||||| |||||| || || ||
Sbjct 75027 AGGTGATGCGTGAGTGA--AGAACTTGCTAGACATAAGGTTGTAGGTTTCAAG 75077
>seq367
Length=17319
Score = 104 bits (114), Expect = 3e-17
Identities = 336/511 (66%), Gaps = 28/511 (5%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
||||||||||| || || | | || || | ||| || | ||| | ||||| || |
Sbjct 13052 CGATCGAAACGGCCGGGTCTCATCAGCGCCTTATCCAGGACATCAGCGCGGTTGGTGCCA 12993
Query 11563 GCAATGACTACAAT--GCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|| | ||| || || || | | ||| ||| || |||||||| || || | |||||
Sbjct 12992 GCCAGGACGACGATTTGCTCGGCGG--TGTTGAAGCCATCCATTTCGGTCAGGATCTGGT 12935
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC----CGAA-CGCTTCT- 11674
||| ||| || ||||||||||| | || || | ||| |||| |||||||
Sbjct 12934 TGAGCGTGGACTCGCGCTCATCGTT----GCCACCCCCCATGCGGTTCGAATCGCTTCTG 12879
Query 11675 ----TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730
|| | ||||||||||||||| || || | ||| || || ||| || | |
Sbjct 12878 GAGCGGCCAATAGCGTCAATCTCATCAATAAAGATGATGCATGGCGCGTTCTTGCGCG-C 12820
Query 11731 TGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789
||| | ||||| ||||| |||||| || || || || || |||||||| || || |
Sbjct 12819 TGTAGCAAAAAGATCACGCACACGCGACGGACCCACGCCGACAAACATCTCGACAAACTC 12760
Query 11790 TGCGGCA-GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848
| | || || || || ||| ||||| ||||| ||||| |||| || || |
Sbjct 12759 GGAGCCACTGACGCT-AAAGAACGGAACGCCCGACTCGCCAGCCGTGGCCTTGGCTAGCA 12701
Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-- 11906
| ||||| ||||| || || | || | || | ||||| || ||||| ||||||||
Sbjct 12700 GCGTCTTGCCCGTTCCCGGAGGGCCCGATAGGATAGCGCCGCGCGGGATTTTGGCACCCA 12641
Query 11907 -ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965
|| |||| | || ||||| |||||||| | || | |||| | || |||
Sbjct 12640 GACGCACAAACT---TTTCGGGCTTTTTGAGGAACTGGACGAACTCCATGATCTCGACCT 12584
Query 11966 TGGCGGAGTCGATACCCTCAACATCGGTGAA 11996
|||| ||| || || | |||||||| ||
Sbjct 12583 TGGCCTCGTCCATTCCGGCCACATCGGTAAA 12553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588970014531400
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