Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq545 150 2e-31
seq126 120 4e-22
>seq545
Length=97716
Score = 150 bits (166), Expect = 2e-31
Identities = 826/1300 (64%), Gaps = 31/1300 (2%)
Strand=Plus/Plus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|||||||| | |||||||||||||||||| ||||| || || | || |||| ||| |
Sbjct 73759 TAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTG 73818
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054
||||| ||||| ||||| | | |||| || || | ||| | | || || |||
Sbjct 73819 GCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 73878
Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112
|| ||| | ||| || | | | | || || |||| | ||||||||||||| || |
Sbjct 73879 TTCAGAGAAGTCCAATCCCACAGGTCA-CTGGGAGTCACAT-CCCACATATCAAACTGCA 73936
Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172
| | |||||||| |||||||||||| | || || | ||| | || | || |
Sbjct 73937 GGATGCCTTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGA 73996
Query 106173 ATTCACAGCTC-GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231
||| || | || ||| | ||||| || ||||||||||| || | || | |
Sbjct 73997 TTTC-CATCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGC 74055
Query 106232 TCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGA 106286
| |||||| || ||||| ||||||| | || || | || || |
Sbjct 74056 TGACGTGCTTCAGGGGACTCAAAAGGCATGCGTAGAGC-----AAGGAAGGCGTCAGCCA 74110
Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346
|||| || ||||| | ||||| || | || ||||| || || | || || |
Sbjct 74111 GACCCTGCACACCAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTA 74170
Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406
| ||||| || ||||||| ||||| || ||| ||||| || |||| ||
Sbjct 74171 CAGGATAGTGGTTCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTT 74230
Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466
| || || |||| | | ||| | | | | | | || | ||||||||||
Sbjct 74231 CGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGA 74290
Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526
||||| | ||||| ||||| |||||| | ||||| | ||| || || |
Sbjct 74291 GAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGC 74350
Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586
| | ||| || || ||| || || | ||| || || || ||||| |||||| |
Sbjct 74351 ATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGT 74410
Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646
| ||||| |||||| | || | || || || ||||| | | ||||| || | |||||
Sbjct 74411 CTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA 74470
Query 106647 -CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 106705
| || | | || | |||| | | || |||||| ||| |||||| || ||
Sbjct 74471 GCTTCTGGGCCTTG-ACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTCATACAGA 74529
Query 106706 GCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAAAA 106763
|| |||||||| || || | || ||| | | ||||| || || ||| || | |
Sbjct 74530 GCCTCAAACTCTTCGCC-ATAGCAGTCTGCCAAGCCTGG-GCATTCATTGGGGCACATGA 74587
Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823
| | ||| | || || |||||| ||||||||||| ||||| ||||| ||||
Sbjct 74588 GCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCA 74647
Query 106824 AAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882
|||| || || | | ||| || | ||||| | || ||||| |||| || ||||||
Sbjct 74648 AAAATAGGTCACGAGCACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAAC 74706
Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGC 106939
|| | || ||| || ||||||||||| || || | || | | ||| |||
Sbjct 74707 TCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTT 74766
Query 106940 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 106999
||| | || | ||||| || || ||| ||| || || || ||||| |||| ||| ||
Sbjct 74767 CCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCG 74826
Query 107000 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 107059
| || ||| || || || ||| || | |||| | | | || | |
Sbjct 74827 TTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTG 74886
Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGA 107117
| || ||||| || ||| ||| || || | ||||| | | | | || || | || |
Sbjct 74887 AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCA-AGT-CTTGAGGGTATCGTAAA 74944
Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177
| || | ||| ||| || || || | | ||||| || |||| ||||| |
Sbjct 74945 TGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGG 75004
Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217
| ||||| ||||||||||| || |||| ||||||| ||||
Sbjct 75005 GAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAA 75044
>seq126
Length=40607
Score = 120 bits (132), Expect = 4e-22
Identities = 525/819 (64%), Gaps = 29/819 (4%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| || || ||||||||||||||||||||||| || | || ||||| |||||
Sbjct 37817 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 37876
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099
||||| || || ||| | || ||| | | || | | |||| ||
Sbjct 37877 AAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGAGCAACA------AGC 37930
Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159
|| || || | ||| |||||||||| | |||| || | |||||| || | |||
Sbjct 37931 AGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGA 37990
Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219
||| || || || ||| || |||| | ||||| ||| |||| || || | | |||
Sbjct 37991 CCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGATC 38050
Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAA 117278
|| | || | |||| | || || || | ||| ||| |||||
Sbjct 38051 TTTTGCACGAGGTCCTTGCTGGGGCGGTTGTTCAG-GTGTGAGAACAGCAGGCAAGCAAA 38109
Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338
|| ||| ||||||||||| ||||||||||| || ||||||||| || || |||||
Sbjct 38110 GTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCAT 38169
Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398
|||||| ||||| || ||| |||||| | ||| | || ||||| ||||| || ||
Sbjct 38170 GAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATGCCTTC 38229
Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATT 117457
||| || || || | ||||||| |||||||| ||| | |||| | | ||| |
Sbjct 38230 GACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGATCCACT 38288
Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAAAT 117513
||| ||||| | ||||| || || || | ||| | || || | || |
Sbjct 38289 TCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAACAGGT 38348
Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573
| ||| || | ||| ||||| ||||| |||| |||| || || |||||
Sbjct 38349 ATGTGC-GCTGT---GATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTCA 38404
Query 117574 CCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTG 117632
|||| ||| ||| ||| | || | ||||||| |||| || ||| |||||
Sbjct 38405 GAGTGAATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCTG 38463
Query 117633 CACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 117692
|| || ||| || | | || || || ||||| ||||| || | || ||
Sbjct 38464 AACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGAA 38523
Query 117693 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 117749
||| || || |||| ||||| | || || | | |||| || | ||||||||
Sbjct 38524 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAGTC 38583
Query 117750 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788
|| ||||| ||||| | ||||| || || ||||||||
Sbjct 38584 GTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589974804320120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |