Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq545 150 2e-31 seq126 120 4e-22 >seq545 Length=97716 Score = 150 bits (166), Expect = 2e-31 Identities = 826/1300 (64%), Gaps = 31/1300 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | |||||||||||||||||| ||||| || || | || |||| ||| | Sbjct 73759 TAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTG 73818 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 ||||| ||||| ||||| | | |||| || || | ||| | | || || ||| Sbjct 73819 GCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 73878 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || ||| | ||| || | | | | || || |||| | ||||||||||||| || | Sbjct 73879 TTCAGAGAAGTCCAATCCCACAGGTCA-CTGGGAGTCACAT-CCCACATATCAAACTGCA 73936 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | |||||||| |||||||||||| | || || | ||| | || | || | Sbjct 73937 GGATGCCTTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGA 73996 Query 106173 ATTCACAGCTC-GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 ||| || | || ||| | ||||| || ||||||||||| || | || | | Sbjct 73997 TTTC-CATCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGC 74055 Query 106232 TCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 | |||||| || ||||| ||||||| | || || | || || | Sbjct 74056 TGACGTGCTTCAGGGGACTCAAAAGGCATGCGTAGAGC-----AAGGAAGGCGTCAGCCA 74110 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 |||| || ||||| | ||||| || | || ||||| || || | || || | Sbjct 74111 GACCCTGCACACCAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTA 74170 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 | ||||| || ||||||| ||||| || ||| ||||| || |||| || Sbjct 74171 CAGGATAGTGGTTCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTT 74230 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466 | || || |||| | | ||| | | | | | | || | |||||||||| Sbjct 74231 CGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGA 74290 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 ||||| | ||||| ||||| |||||| | ||||| | ||| || || | Sbjct 74291 GAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGC 74350 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 | | ||| || || ||| || || | ||| || || || ||||| |||||| | Sbjct 74351 ATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGT 74410 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 | ||||| |||||| | || | || || || ||||| | | ||||| || | ||||| Sbjct 74411 CTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA 74470 Query 106647 -CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 106705 | || | | || | |||| | | || |||||| ||| |||||| || || Sbjct 74471 GCTTCTGGGCCTTG-ACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTCATACAGA 74529 Query 106706 GCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAAAA 106763 || |||||||| || || | || ||| | | ||||| || || ||| || | | Sbjct 74530 GCCTCAAACTCTTCGCC-ATAGCAGTCTGCCAAGCCTGG-GCATTCATTGGGGCACATGA 74587 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823 | | ||| | || || |||||| ||||||||||| ||||| ||||| |||| Sbjct 74588 GCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCA 74647 Query 106824 AAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882 |||| || || | | ||| || | ||||| | || ||||| |||| || |||||| Sbjct 74648 AAAATAGGTCACGAGCACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAAC 74706 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGC 106939 || | || ||| || ||||||||||| || || | || | | ||| ||| Sbjct 74707 TCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTT 74766 Query 106940 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 106999 ||| | || | ||||| || || ||| ||| || || || ||||| |||| ||| || Sbjct 74767 CCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCG 74826 Query 107000 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 107059 | || ||| || || || ||| || | |||| | | | || | | Sbjct 74827 TTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTG 74886 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGA 107117 | || ||||| || ||| ||| || || | ||||| | | | | || || | || | Sbjct 74887 AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCA-AGT-CTTGAGGGTATCGTAAA 74944 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 | || | ||| ||| || || || | | ||||| || |||| ||||| | Sbjct 74945 TGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGG 75004 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 | ||||| ||||||||||| || |||| ||||||| |||| Sbjct 75005 GAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAA 75044 >seq126 Length=40607 Score = 120 bits (132), Expect = 4e-22 Identities = 525/819 (64%), Gaps = 29/819 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || ||||||||||||||||||||||| || | || ||||| ||||| Sbjct 37817 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 37876 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099 ||||| || || ||| | || ||| | | || | | |||| || Sbjct 37877 AAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGAGCAACA------AGC 37930 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || || || | ||| |||||||||| | |||| || | |||||| || | ||| Sbjct 37931 AGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGA 37990 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||| || || || ||| || |||| | ||||| ||| |||| || || | | ||| Sbjct 37991 CCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGATC 38050 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAA 117278 || | || | |||| | || || || | ||| ||| ||||| Sbjct 38051 TTTTGCACGAGGTCCTTGCTGGGGCGGTTGTTCAG-GTGTGAGAACAGCAGGCAAGCAAA 38109 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| ||||||||||| ||||||||||| || ||||||||| || || ||||| Sbjct 38110 GTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCAT 38169 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 |||||| ||||| || ||| |||||| | ||| | || ||||| ||||| || || Sbjct 38170 GAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATGCCTTC 38229 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATT 117457 ||| || || || | ||||||| |||||||| ||| | |||| | | ||| | Sbjct 38230 GACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGATCCACT 38288 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAAAT 117513 ||| ||||| | ||||| || || || | ||| | || || | || | Sbjct 38289 TCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAACAGGT 38348 Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573 | ||| || | ||| ||||| ||||| |||| |||| || || ||||| Sbjct 38349 ATGTGC-GCTGT---GATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTCA 38404 Query 117574 CCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTG 117632 |||| ||| ||| ||| | || | ||||||| |||| || ||| ||||| Sbjct 38405 GAGTGAATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCTG 38463 Query 117633 CACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 117692 || || ||| || | | || || || ||||| ||||| || | || || Sbjct 38464 AACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGAA 38523 Query 117693 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 117749 ||| || || |||| ||||| | || || | | |||| || | |||||||| Sbjct 38524 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAGTC 38583 Query 117750 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 || ||||| ||||| | ||||| || || |||||||| Sbjct 38584 GTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974804320120