Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq323 149 7e-31 >seq323 Length=119441 Score = 149 bits (164), Expect = 7e-31 Identities = 276/402 (69%), Gaps = 5/402 (1%) Strand=Plus/Minus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 |||||||| || | || || || ||||| || ||||| |||| ||||||||| ||| Sbjct 56522 TGTTTGATTCCTGTCTCTGCCCACGGAACCAACCCTGCCTCGGCTGCCATGGCAGGTATG 56463 Query 154779 AAAGTTGTAGGTGTCAAGTGTGAT---GATGATGGTAACATAGACATCAAAGATCTAGAG 154835 ||||| | ||||||||||| | ||| ||| | || ||| ||||| || Sbjct 56462 CGTGTTGTTCCTATCAAGTGTGATACCACTACTGGGAACTTGGATATCGCTGATCTGGAA 56403 Query 154836 AAGAA-AGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTAC 154894 ||| |||| | | || | |||||| || |||||||| || ||||| ||| Sbjct 56402 GCGAAGTGCAA-AAAGCATGCTGATGAACTTGGCTGCATTATGATCACTTACCCTAGTAC 56344 Query 154895 ACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGG 154954 |||| | |||||| || || || || || ||| | | || |||| | ||||||| Sbjct 56343 TTTTGGTATCTTTGAACCTGACGTTCGAAAGGCCTGTGATCTTGTGCATGCCTATGGTGG 56284 Query 154955 TCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGA 155014 |||||||| | || || || || | ||||| || | || || | || |||| Sbjct 56283 CCAGGTATACATGGACGGCGCCAACATGAATGCCCAAATTGGTCTTACCTCTCCTGGTGA 56224 Query 155015 GTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGG 155074 | ||| || ||||| || || || ||| ||||||| |||||||| ||||| |||||||| Sbjct 56223 GATTGGCGCTGATGTGTGCCACCTGAACCTACATAAGACATTCTGCATTCCTCATGGAGG 56164 Query 155075 TGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCT 155116 || || |||||||| || ||||| |||| |||||||| Sbjct 56163 AGGTGGCCCTGGCGTCGGCCCTATCTGTGTCAAGAAACATCT 56122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579206913749920